Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0166
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0200 - 15016084-15016342,15016814-15016869,15016963-150179...    31   1.0  
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533...    30   2.4  
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773...    30   2.4  
08_01_0736 - 6745757-6745815,6745858-6746038                           29   3.1  
11_06_0220 - 21374816-21376849                                         29   5.4  
03_03_0255 + 15894081-15894356,15894565-15894635,15894746-158947...    29   5.4  
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    28   9.5  

>07_03_0200 -
           15016084-15016342,15016814-15016869,15016963-15017960,
           15018707-15018768,15019242-15019274,15019697-15019881,
           15020033-15020133,15020783-15020795,15021216-15021319,
           15021593-15021693,15022773-15022849,15022965-15023021,
           15023158-15023268,15023803-15023859
          Length = 737

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = -2

Query: 542 FGLSMPSSVCARVLYLEVDLVVLPQRNEFPADS*TGPVFAVPVGNPAIVAQCKSETVSPV 363
           FGLS  SSV AR ++  +       R+ F A    GP     +G+    A C S  V P 
Sbjct: 188 FGLSGESSVTAREMWGTLSQDGCFDRDNFSA----GPSMPSSLGDTVCAAVCASTWVEPH 243

Query: 362 HKLNIVFS 339
            +  +VFS
Sbjct: 244 GRCTVVFS 251


>08_02_1381 -
           26551920-26552053,26552963-26553070,26553154-26553340,
           26554107-26554316
          Length = 212

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 303 GDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSR 446
           GD   V F +I A+      Y  DG+   + D  G    DS+D+TS +
Sbjct: 44  GDTVHVSFVVIKADT--PWHYSEDGVDLVVKDPNGAQVRDSRDKTSDK 89


>02_05_0492 -
           29476883-29476949,29477030-29477166,29477292-29477383,
           29477490-29477587,29477677-29477804,29477883-29478026,
           29478108-29478397,29478553-29478739,29479085-29479210,
           29480488-29480538,29480952-29481002,29482639-29484054
          Length = 928

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 117 EHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWSTPTSS 275
           EH+  +    + D A     LI  D KG+ + ++   +     M+C++ P  S
Sbjct: 744 EHVIGETSSEEEDDAQNNLALINKDVKGQTMADIFQQVFNATSMDCFTLPVRS 796


>08_01_0736 - 6745757-6745815,6745858-6746038
          Length = 79

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 243 KMNCWSTPTSSGCKAPRTSSGDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGVAYGD 422
           +  C  T ++   +A  T+SGD   VE    LA N+V  ++R DG+   LS +      D
Sbjct: 17  RSRCLGTESAPWNEAGTTASGDTAGVEAEWHLAANHV-CIWRYDGVLHALSSDALSMAAD 75

Query: 423 SKDR 434
            + R
Sbjct: 76  GRRR 79


>11_06_0220 - 21374816-21376849
          Length = 677

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 404 AIVAQCKSETVSPVHKLNIVFS*DKCELNRETIPGRCPRSLASRAGRRTPAVHLV 240
           A+++ CK+  +       I +  +KC L  E     C   +  RAGR T A HL+
Sbjct: 535 AVLSACKNTGLVEEGMELIKYMQEKCGLKPEIEHISCVVDMLCRAGRLTDAYHLI 589


>03_03_0255 +
           15894081-15894356,15894565-15894635,15894746-15894774,
           15894865-15895061,15895156-15895368,15895851-15895976,
           15896144-15896260,15896546-15896662,15896776-15896869,
           15897644-15897723
          Length = 439

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 437 QFKSQLEIHSAVGEQQGLLQDREHERK 517
           Q KSQ  ++S +GE++ + +D E E++
Sbjct: 249 QLKSQRSLYSPIGEEEEVTEDEEEEKE 275


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 386 YIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGLLQDREHERKQ 520
           YIE Q       +Q+Q Q+  Q   H  +  QQ LLQ    +++Q
Sbjct: 77  YIETQQAKAEHQKQQQQQYHHQQHQHQQIQMQQMLLQRAAQQQQQ 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,625,717
Number of Sequences: 37544
Number of extensions: 343052
Number of successful extensions: 1017
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)