Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0166
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.79 
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   31   1.0  
SB_40644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  

>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 123 LYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWSTPTSSGCKAPRTSS 302
           +Y  +I +   + +       TD +  L+  ++N  IR  KM+ W  P+S   K  R + 
Sbjct: 211 IYKKIIGSRQSAGIRLQGSRITDRRITLVREIING-IRTVKMHAWEKPSSDIVKRTRKAE 269

Query: 303 GDCFPVEFTL 332
            + + + FT+
Sbjct: 270 VNKYRLMFTI 279


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 365 QARRSRFYIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGL--LQDREHERKQNLA 529
           + RR +   ERQ R      ++Q+Q + QLE+     EQQ    LQ R+ E KQ +A
Sbjct: 637 ERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRMA 693


>SB_40644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 635 YLNSAXTSYHWXLKPSKLATP*AHVVAHFC*FGLSMP--SSVCARVLYLEVDL 483
           YLN   T   W   P K  TP +  + HF    LS+P     C  V+  E+ L
Sbjct: 3   YLNLLYTMVEWMRVPHKTDTPESKSIKHFFCQELSLPIVGDDCLAVILFEMVL 55


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 99  FNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKMNCWS 260
           F+ ++       V+ A Y + V R++L   + K  L+ +V+  +  NN+M C++
Sbjct: 228 FSPVIQARYVRIVVQAWYTNIVMRAELYGCEGK-RLVEHVIRKVTGNNQMQCYA 280


>SB_7691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 443 KSQLEIHSAVGEQQGLLQDREHERKQNLALKVR 541
           K++  +H  +GE++ L  D+E ER++ L L  R
Sbjct: 279 KAREFVHQLIGEEERLCADKELERQRKLILLKR 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,465,549
Number of Sequences: 59808
Number of extensions: 400576
Number of successful extensions: 1240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)