Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0166
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z70307-1|CAA94334.1|  205|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical
           protein T08G2.3 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 57  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIR 236
           CL  ++ YA E  AF  ++A H     ++AD    +E ++LI T      + N V +   
Sbjct: 285 CLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLI-TYKSANDVDNKVRSSYN 343

Query: 237 NNKMNCWSTPTSS 275
            +   C++  T++
Sbjct: 344 ASIAKCFAADTAN 356


>AC006665-5|AAF39907.1|  630|Caenorhabditis elegans Hypothetical
           protein H27M09.1 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 389 IERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGLLQDREHERKQNLALKVRTNRNG 556
           IER+ +     +Q ++  K+ LE H+ + E QG++ + E +  +   L  +  R G
Sbjct: 77  IERKRKKKEEDKQSEEARKTLLEKHAEIMETQGVIDESERQLMEEEELLDKVTRGG 132


>Z70307-1|CAA94334.1|  205|Caenorhabditis elegans Hypothetical
           protein C39E9.1 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 186 TDNKGELITNVVNNLIRNNKMNCWSTPTSSGCKAPRTSSGDC 311
           T N+G ++ N++N  +      C + PT + C+   T++G C
Sbjct: 166 TFNRGVVVGNIINQQVYQTGPTCSACPTGTTCE---TATGLC 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,226
Number of Sequences: 27780
Number of extensions: 295661
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)