Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0165
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   4.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.6  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 517 DAFGDGQTMVKDWWCKSRNGFPQRLMLPLGTI 422
           D+  D +T+  ++WCK R+ F +     LGT+
Sbjct: 290 DSGSDTETLYLNYWCKIRHFFREGFAEFLGTL 321


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = -3

Query: 693 RLHGQAHERQRQTPSTCSKLDSFMYKLVNGKNTIVRSSMDMQGFIPEYLSTRRVMESEMM 514
           RL   A E+Q Q   T +KL S   +       +     D+Q    E    R+++  +  
Sbjct: 471 RLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQ 530

Query: 513 PSEMAR 496
            S+  R
Sbjct: 531 DSQKLR 536


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 105 EDLQRRHDDEQH--DELITRHC 46
           ED Q RH+DE+H    LI  HC
Sbjct: 916 EDPQSRHNDERHLYSVLIDGHC 937


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 459 PLRDLHHQSLTIVWPSPKASFRFPLH 536
           PL+D +     I WPS K + RF LH
Sbjct: 659 PLQDCYDFLQKIDWPSSKDANRFYLH 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,957
Number of Sequences: 5004
Number of extensions: 62410
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)