Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0165
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) 29 4.0
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 29 4.0
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6) 29 4.0
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11) 29 4.0
SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018) 29 5.2
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_44630| Best HMM Match : HECT (HMM E-Value=0) 29 5.2
SB_13515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_2642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 9.1
SB_28697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)
Length = 447
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 544 DSSCNGKRNDAFGDGQTMVKDWWCKSRNGFPQRLMLPLGTIGGLEMQ 404
+SS N K D DG++M KDW SR F ++L L G ++
Sbjct: 7 ESSGNSKLTDCNFDGESMAKDW---SRFTFDSYVLLHLAMTMGYSIE 50
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -3
Query: 153 HDEGRSHLPGLGHA-GQEDLQRRHD--DEQH 70
H+EG+ LPG H+ GQ +Q+R + EQH
Sbjct: 789 HEEGQQQLPGGNHSPGQHHMQQRREALPEQH 819
>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
Length = 192
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -3
Query: 222 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQR--RHDDEQHDELITRH 49
RN+ + RH E + D DGHDE R++ H + + + RHD+E+++E +H
Sbjct: 43 RNN-EHEDRHDEERNDEDE--DGHDEERNNEHEDRHDEERNNEHEDRHDEERNNEEEDKH 99
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -3
Query: 222 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELITRH 49
R+D ++ H E + D+G D +E R G ++ + RHD+E++D+ RH
Sbjct: 122 RHDEERNNEH-EDRHDKGR-NDDEEEDRHD----GERNDDEEEDRHDEERNDDEEDRH 173
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 222 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 67
RND ++ RH E + D D HDE R+ +++ + RHD+++HD
Sbjct: 152 RNDDEEEDRHDEERNDDEE--DRHDEKRN---------EDEEEDRHDEDRHD 192
>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
Length = 1068
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Frame = +1
Query: 325 HNGPSSWSCPMWARAYRCGPATR*RTSASPNLQSYRGAA*VSEGIRCE--TCTTSP*PLS 498
+ G S+WS +Y CG + +T N + RG A + E C P
Sbjct: 426 NGGWSNWSADYSTCSYTCGGGVQWKTRTCTNPKPSRGGADCVGSSKGEYRICNPEACPSG 485
Query: 499 GHLRRHHFAFHYTTSRKVLWDKSLHIHGATDDG 597
+R H ++ ++ + HG DG
Sbjct: 486 TDTQRQHQCKSVNSAYSAHYENVRYDHGIAQDG 518
>SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)
Length = 242
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 320 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVA 466
TS TV+HH H G+ ++ + L+ +T NR+ +++ +S A
Sbjct: 179 TSLTVVHHIHDVMGKFSASPTQKGEVAQLYYRTKNRSSKLNRARPQSFA 227
>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 437 APRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLH 297
A R+D GD DV+ +VA H HDHD + L+L YL+
Sbjct: 21 ASRHD--HGDGDVKIKVASRHD---PDKRHDHDNDTITLALRSRYLY 62
>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
Length = 1003
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 621 YKLVNGKNTIVRSSMDMQGFIPEYLSTRRVMESEMMPSEMARQWSRTGGASLATDSL 451
YK++ G + ++S + F + LS + + E +MAR+ S+ G S DSL
Sbjct: 554 YKVIQGSSRPDKTSFQLSVFYCDELSKKLDFKKEYGNWQMARRLSKLPGYSTDKDSL 610
>SB_13515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 731 VDAVVXIFLGPKYDCMGRLMSVNDKRLRHVRSWT 630
VD V+ F P Y + L + +LR +RSWT
Sbjct: 91 VDKVIDFFDVPNYSKLQELEAAAANKLRELRSWT 124
>SB_2642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 731 VDAVVXIFLGPKYDCMGRLMSVNDKRLRHVRSWT 630
VD V+ F P Y + L + +LR +RSWT
Sbjct: 84 VDKVIDFFDVPNYSKLQELEAAAANKLRELRSWT 117
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = -3
Query: 240 QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQED----LQRRHDDEQ 73
QH D ++ +H + QQ+ G HD+ + H H Q+ Q+RHD +Q
Sbjct: 1064 QHPSEQETDHEQPAQHDQQQQNTGQQQQ-HDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQ 1122
Query: 72 --HDELITRH 49
HD+ +H
Sbjct: 1123 QHHDQQQQQH 1132
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -3
Query: 189 EHQQDRGHLGDGHDEGR--SHLPGLGHAGQEDLQRRHDDEQHD 67
+HQQD+ H H R H GH+ E RR D H+
Sbjct: 429 KHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHE 471
>SB_28697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 588 RSSMDMQGFIPEYLSTRRVMESEMMPSEMARQWSR 484
R ++ ++ FI Y R V+ ++++PS A WS+
Sbjct: 47 RRNLSLEEFIQRYDGKRPVLITDILPSWKAANWSK 81
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/86 (32%), Positives = 35/86 (40%)
Frame = -3
Query: 306 VSPPCLSDIHLTDRLTWQLLH*QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLP 127
VS L D H R+ LH +HE RN L H H+ R L D H+ R L
Sbjct: 895 VSRKRLRDRHKASRIR---LHDRHEAS-RNRL-----HDRHEASRNRLRDRHEASRKRLR 945
Query: 126 GLGHAGQEDLQRRHDDEQHDELITRH 49
A L+ RH + + L RH
Sbjct: 946 DRHKALCNRLRDRH-EASRNRLRDRH 970
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -3
Query: 237 HEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHD 82
+ +R R++ + H+ R L D H+ R+ L A + L+ RH+
Sbjct: 953 NRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRLRDRHE 1004
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,002,751
Number of Sequences: 59808
Number of extensions: 529229
Number of successful extensions: 1466
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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