Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0165
(740 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB046843-1|BAB13449.2| 1236|Homo sapiens KIAA1623 protein protein. 33 1.4
BC033078-1|AAH33078.1| 419|Homo sapiens UCKL1 protein protein. 31 4.3
BC022855-1|AAH22855.1| 707|Homo sapiens SH3KBP1 binding protein... 31 4.3
AF258553-1|AAG23756.1| 707|Homo sapiens PP203 protein. 31 4.3
U89277-1|AAC51169.1| 1004|Homo sapiens polyhomeotic 1 homolog pr... 30 7.6
BX640639-1|CAE45787.1| 610|Homo sapiens hypothetical protein pr... 30 7.6
BC073964-1|AAH73964.1| 957|Homo sapiens PHC1 protein protein. 30 7.6
BC017748-1|AAH17748.1| 447|Homo sapiens PHC1 protein protein. 30 7.6
BC002871-1|AAH02871.2| 481|Homo sapiens PHC1 protein protein. 30 7.6
AB209063-1|BAD92300.1| 1099|Homo sapiens Polyhomeotic-like prote... 30 7.6
>AB046843-1|BAB13449.2| 1236|Homo sapiens KIAA1623 protein protein.
Length = 1236
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 240 QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHA 112
Q + R R + ++R RH EH R H G +E R+ GL A
Sbjct: 902 QQQQRRRREEEERQRHAEHHARREHDSGGREEARAEGSGLDPA 944
>BC033078-1|AAH33078.1| 419|Homo sapiens UCKL1 protein protein.
Length = 419
Score = 31.1 bits (67), Expect = 4.3
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 195 HVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRR 88
H H Q R HLG G R+ L GQ D RR
Sbjct: 330 HAHHHQVRAHLGTGRPRARAPAQLLAPQGQGDQSRR 365
>BC022855-1|AAH22855.1| 707|Homo sapiens SH3KBP1 binding protein 1
protein.
Length = 707
Score = 31.1 bits (67), Expect = 4.3
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 162 RGVHGLAGVRHAEVFSVDHYVSELHVASEEAAMSIG--LSNGYPRGMVEIHELQRQAQRS 335
RGVHG + + A+ + + V L + E S G L NGY + ++R+ + S
Sbjct: 87 RGVHGSSLLHEAQFYGLTPLVRRLQLREELDRSSCGNVLFNGYL--PPPVFPVKRRNRHS 144
Query: 336 FIMVMSNVGKSIPVRTGDTM 395
+ G+ PVR +TM
Sbjct: 145 LVGPQQLGGRPAPVRRSNTM 164
>AF258553-1|AAG23756.1| 707|Homo sapiens PP203 protein.
Length = 707
Score = 31.1 bits (67), Expect = 4.3
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 162 RGVHGLAGVRHAEVFSVDHYVSELHVASEEAAMSIG--LSNGYPRGMVEIHELQRQAQRS 335
RGVHG + + A+ + + V L + E S G L NGY + ++R+ + S
Sbjct: 87 RGVHGSSLLHEAQFYGLTPLVRRLQLREELDRSSCGNVLFNGYL--PPPVFPVKRRNRHS 144
Query: 336 FIMVMSNVGKSIPVRTGDTM 395
+ G+ PVR +TM
Sbjct: 145 LVGPQQLGGRPAPVRRSNTM 164
>U89277-1|AAC51169.1| 1004|Homo sapiens polyhomeotic 1 homolog
protein.
Length = 1004
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 174 RGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELIT 55
RG D R+ + G H GQED R D+ +DE ++
Sbjct: 856 RGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALS 895
>BX640639-1|CAE45787.1| 610|Homo sapiens hypothetical protein
protein.
Length = 610
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 174 RGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELIT 55
RG D R+ + G H GQED R D+ +DE ++
Sbjct: 462 RGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALS 501
>BC073964-1|AAH73964.1| 957|Homo sapiens PHC1 protein protein.
Length = 957
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 174 RGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELIT 55
RG D R+ + G H GQED R D+ +DE ++
Sbjct: 809 RGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALS 848
>BC017748-1|AAH17748.1| 447|Homo sapiens PHC1 protein protein.
Length = 447
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 174 RGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELIT 55
RG D R+ + G H GQED R D+ +DE ++
Sbjct: 299 RGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALS 338
>BC002871-1|AAH02871.2| 481|Homo sapiens PHC1 protein protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 174 RGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELIT 55
RG D R+ + G H GQED R D+ +DE ++
Sbjct: 333 RGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALS 372
>AB209063-1|BAD92300.1| 1099|Homo sapiens Polyhomeotic-like protein 1
variant protein.
Length = 1099
Score = 30.3 bits (65), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 174 RGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELIT 55
RG D R+ + G H GQED R D+ +DE ++
Sbjct: 951 RGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALS 990
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,449,713
Number of Sequences: 237096
Number of extensions: 2353884
Number of successful extensions: 5687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5687
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -