Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0165
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 30 2.0
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 30 2.0
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 30 2.0
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 4.6
U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protei... 28 6.0
U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 28 6.0
U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 28 6.0
U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 28 6.0
U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein. 28 6.0
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -3
Query: 213 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 67
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 348 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 394
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -3
Query: 213 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 67
+ K + H GH D +D G SH G G + HD +HD
Sbjct: 366 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 412
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 295 WWRYMSSSDKHNGPSSWSCPMWARAYR 375
WWRY+ S +H+GP+ WA R
Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRR 146
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 449 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEG 333
E + AP + G+ H G H +A AH GH + G
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG 546
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = -3
Query: 201 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
P H EH + + H EG H H + + RH E H
Sbjct: 368 PAHHEHHEHKDGAHHEHKEGEHH-EHAAHHDEHGVHHRHHGEHH 410
>U80451-7|AAB37841.3| 277|Caenorhabditis elegans Collagen protein
17 protein.
Length = 277
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3
Query: 210 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
>U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform c protein.
Length = 284
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 603 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 511
+N + ++DM+ F P RR++E++ P
Sbjct: 104 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 134
>U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform b protein.
Length = 290
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 603 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 511
+N + ++DM+ F P RR++E++ P
Sbjct: 110 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 140
>U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 603 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 511
+N + ++DM+ F P RR++E++ P
Sbjct: 183 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 213
>U18384-1|AAA62504.1| 293|Caenorhabditis elegans collagen protein.
Length = 293
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3
Query: 210 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
Q+ H +HQ QD+ L D + P H G +D Q + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,539,477
Number of Sequences: 27780
Number of extensions: 369661
Number of successful extensions: 1164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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