Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0165
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63100.1 68416.m07087 glycine-rich protein                          31   0.80 
At3g21300.1 68416.m02691 RNA methyltransferase family protein co...    30   1.9  
At4g09630.1 68417.m01583 expressed protein contains Pfam profile...    29   4.3  
At2g39795.1 68415.m04886 mitochondrial glycoprotein family prote...    28   5.7  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    27   9.9  
At4g18600.1 68417.m02755 expressed protein                             27   9.9  
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    27   9.9  

>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 186 HQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
           H    GH   GHD G  H  G GH      +R   D +H
Sbjct: 77  HGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRH 115



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = -3

Query: 195 HVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
           H EH  DRGH   GH  G  H  G GH       R   D  H
Sbjct: 83  HREHGHDRGH---GHGRGHGHGHGHGHRRHGRDHRHGRDRGH 121


>At3g21300.1 68416.m02691 RNA methyltransferase family protein
           contains TIGRfam TIGR00479: RNA methyltransferase, TrmA
           family
          Length = 554

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 517 DAFGDGQTMVKDWWCKSRNGFPQRLMLPLG---TIGGLEMQMYVIVSPVRTGMLLPTLD 350
           D + D +  +  + C+S  GF + LML  G     G LE+ +  + S  +  +L P +D
Sbjct: 263 DCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVD 321


>At4g09630.1 68417.m01583 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 711

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 219 NDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
           ND   +P   E  +D     D HD        +GH G E+ +   D+ +H+E
Sbjct: 220 NDGHHQPFDTESNEDDSI--DSHDTQGDEYVDMGHDGDENEESHKDNHKHNE 269


>At2g39795.1 68415.m04886 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 250

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 644 VRSWTALCTNWSTERTPSSVAPWICKDLSQST 549
           VRS +A+    S  R PSS+ P++ + L+ ST
Sbjct: 23  VRSISAVANRASLARNPSSIRPFVSRALNYST 54


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 153 DHLRGVHGLAGVRHAEVFSVDHY 221
           DHLRG H L G      F  DH+
Sbjct: 85  DHLRGQHSLYGTCDGNFFLYDHF 107


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 431 EGQHKSLRESVAR--LAPPVLDHC-LAISEGIISLSITRRVERYSGINPCI 574
           +  H S  ++ A   L+P VLD   L+++E +    ++  +E + GINPC+
Sbjct: 694 DSTHPSCAKAAAETNLSPEVLDSTKLSVAEAVPQEQVS--LEEFVGINPCL 742


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
 Frame = -1

Query: 665 NDKRLRHVRSW------TALCTNWSTERTPSSVAPWICKDLSQSTFRL 540
           +D +L    SW       A  TNW   + P    PWICK    S  R+
Sbjct: 26  HDNQLNTTSSWLKSHIKAATTTNWGRPKPPMC-KPWICKRSGPSEARM 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,019
Number of Sequences: 28952
Number of extensions: 350646
Number of successful extensions: 1115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)