Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0164
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   2.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   4.8  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   4.8  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   6.4  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   8.5  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   8.5  

>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 430 EWESSEGVPISAILLGGRRPAGV 498
           +WE++  +P+S +L GG  P  V
Sbjct: 698 DWEAASFIPVSYVLAGGLTPKNV 720


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 TVFKNTVSLTWRKHLMVGCGGK 298
           T+F+NT  L ++    V CGG+
Sbjct: 861 TIFRNTAHLRYKADTFVPCGGR 882


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 ASSTGRVNPGTPARKLRLHIQIPGSAPRQSSV 415
           AS+ G V    P+   R+H  +P SAP   S+
Sbjct: 555 ASNLGDVGLRLPSPSPRIHTIVPNSAPEHPSI 586


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 497 TPAGR-LPPS-RMADIGTPSELSHSPSIMGHCSAGVQNLEF 381
           TP  R +PP  + + IGTPS+ ++ P    +C +  QN  +
Sbjct: 542 TPGHRNVPPILKRSSIGTPSQQAYFPDAPHNCHSVPQNSSY 582


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 95  KVECVGDDIA--WMKFDKDGVLRAINPENGFFGVAPGTSAATNPIAMATVFK 244
           K+  +GD+ +  ++KFD D   +     N  FG++ G S   N   M   FK
Sbjct: 20  KIRKLGDNFSLPYLKFDCDHNDKNYRASNRPFGLSTGLSVQLNASNMTDPFK 71


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 284 GCGGKAWDQLQSASSTGRVNPGTP 355
           G G   W  L+S   TG+ N G P
Sbjct: 216 GYGATVWSPLKSGILTGKYNDGIP 239


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -2

Query: 351 VPGLTLPVDEALWSWSHAFPPHPTIRCFRHVSDTVFLNTVAIAIGFVAADVPGATPKNPF 172
           +PG+   +  A W W H  P  P    + +    V +   +       AD PG  P+N +
Sbjct: 96  LPGVLFFIFSAFWLWHHVSPAVPITFAYLYALAVVSMFKCS------TAD-PGILPRNAY 148

Query: 171 S 169
           S
Sbjct: 149 S 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,695
Number of Sequences: 5004
Number of extensions: 80076
Number of successful extensions: 222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)