Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0164
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 174 7e-44
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 171 7e-43
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 170 1e-42
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 3.9
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 29 5.2
SB_40374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_26630| Best HMM Match : ig (HMM E-Value=0.0021) 28 6.8
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072) 28 9.0
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 174 bits (423), Expect = 7e-44
Identities = 86/168 (51%), Positives = 104/168 (61%), Gaps = 8/168 (4%)
Frame = +1
Query: 256 TNVAETPDGGVWWEGMGPAPE--RLVDWKGQP-WDP-----SKKTPAAHPNSRFCTPAEQ 411
TNVA+T DG WWEG+ P + ++ W G P W P ++KT AAHPNSRFC P++
Sbjct: 219 TNVAKTSDGDFWWEGLNPPADGIKIRSWLGDPDWKPEVAGKTRKT-AAHPNSRFCAPSDH 277
Query: 412 CPMIDGEWESSEGVPISAILLGGRRPAGVPLRMESRDWQHGVFMGASMRSEATAAAEHSG 591
CP++D +WE+ GVPISAIL GGRRP GVPL M+S +WQHGVF+ S+ SE TAAAE G
Sbjct: 278 CPIMDKDWENPAGVPISAILFGGRRPYGVPLVMQSFNWQHGVFLATSLSSETTAAAEFKG 337
Query: 592 KMVMHDPFAMXXXXXXXXXXXXEALAVNAAXWNARCPRCFHVNWFRKD 735
K VM DPFAM E + P FHVNWFR D
Sbjct: 338 KAVMRDPFAMRPFFGYNFGKYLEHWLSMEKDPKKKLPLIFHVNWFRLD 385
Score = 146 bits (355), Expect = 1e-35
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = +2
Query: 5 QGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINPENGFF 184
+GKK YIAAAFPSACGKTNLAM+TPT+PG+K ECVGDDIAWM FDKDG LRAINPE GFF
Sbjct: 135 EGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDIAWMWFDKDGTLRAINPECGFF 194
Query: 185 GVAPGTSAATNPIAMATVFKNTV 253
GVAPGTS +NPIAM+T K+T+
Sbjct: 195 GVAPGTSFLSNPIAMSTFQKDTI 217
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 171 bits (415), Expect = 7e-43
Identities = 84/162 (51%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Frame = +1
Query: 256 TNVAETPDGGVWWEGMGPAPERLVDWKGQP-WDPSKKTP-AAHPNSRFCTPAEQCPMIDG 429
TNVA T DG WWE ++ WKG P W P++ P AAHPNSRFC P++ CP++D
Sbjct: 349 TNVAVTSDGDFWWE----EGIKIRSWKGDPDWKPTENGPTAAHPNSRFCAPSDHCPIMDK 404
Query: 430 EWESSEGVPISAILLGGRRPAGVPLRMESRDWQHGVFMGASMRSEATAAAEHSGKMVMHD 609
+WE+ GVPISAIL GGRRP GVPL M+S +WQHGVF+ S+ SE TAAAE GK VM D
Sbjct: 405 DWENPAGVPISAILFGGRRPYGVPLVMQSFNWQHGVFLATSLSSETTAAAEFKGKAVMRD 464
Query: 610 PFAMXXXXXXXXXXXXEALAVNAAXWNARCPRCFHVNWFRKD 735
PFAM E + + P FHVNWFR D
Sbjct: 465 PFAMRPFFGYNFGKYLEHWLNLSKDPKKKLPLIFHVNWFRLD 506
Score = 142 bits (345), Expect = 2e-34
Identities = 63/83 (75%), Positives = 72/83 (86%)
Frame = +2
Query: 5 QGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINPENGFF 184
+GKK YIAAAFPSACGKTNLAM+TPT+PG+K ECVGDDI WM FDKDG LRAINPE+GFF
Sbjct: 265 EGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDINWMWFDKDGTLRAINPESGFF 324
Query: 185 GVAPGTSAATNPIAMATVFKNTV 253
GV PGT+ +NPIAM T K+T+
Sbjct: 325 GVCPGTTFTSNPIAMKTFQKDTI 347
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 170 bits (413), Expect = 1e-42
Identities = 81/164 (49%), Positives = 101/164 (61%), Gaps = 6/164 (3%)
Frame = +1
Query: 256 TNVAETPDGGVWWEGMGPAPE--RLVDWKGQP-WDPSKKTPAAHPNSRFCTPAEQCPMID 426
TN A T DG WWEG+ P+ + W G+ W P + AAHPNSRFCTP+ C ++D
Sbjct: 533 TNTAMTSDGDFWWEGLPDPPKGVSITSWLGEENWSPESGSKAAHPNSRFCTPSANCEIMD 592
Query: 427 GEWESSEGVPISAILLGGRRPAGVPLRMESRDWQHGVFMGASMRSEATAAAEHSGKMVMH 606
+WE+ EGVPISAIL GGRRP GVPL ++ +WQHGVF+ +S+ SE TAAAE GK +M
Sbjct: 593 KDWENPEGVPISAILFGGRRPRGVPLVYKAFNWQHGVFIASSLSSETTAAAEFKGKAIMR 652
Query: 607 DPFAMXXXXXXXXXXXXE---ALAVNAAXWNARCPRCFHVNWFR 729
DPFAM E ++A N + P FHVNWFR
Sbjct: 653 DPFAMRPFFGYNYGRYLEHWLSMADKTKHPNYKLPDIFHVNWFR 696
Score = 143 bits (347), Expect = 1e-34
Identities = 63/83 (75%), Positives = 73/83 (87%)
Frame = +2
Query: 5 QGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINPENGFF 184
+GKK+YIAAAFPSACGKTNLAM+ PT+PG+KV+CVGDDIAWM FDK G LRAINPE+GFF
Sbjct: 449 EGKKKYIAAAFPSACGKTNLAMLKPTIPGWKVDCVGDDIAWMWFDKTGQLRAINPESGFF 508
Query: 185 GVAPGTSAATNPIAMATVFKNTV 253
GVAPGTS TNP A+ T K+T+
Sbjct: 509 GVAPGTSMKTNPEALKTCLKDTI 531
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 295 EGMGPAPERLVDWKGQPWDPSKKTPAAHPN 384
+ +GP P DW + WD K A H N
Sbjct: 35 DSLGPWPSLTDDWDEESWDLEKAVAAMHRN 64
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 52 EDEPRHDDANTARVQSRVRGGRHSLDE 132
+DEP HDD V + RGGR + +E
Sbjct: 1156 DDEPLHDDEQDPNVAGQERGGRTNDEE 1182
>SB_40374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 478 RPAGWRISAHPPSSPTHRLSWDTALPGCRTW 386
RP WR++ P P + + TA GC W
Sbjct: 8 RPTPWRLAGGSPHFPEYAPWFQTANIGCEEW 38
>SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 597
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 278 MVGCGGKAWDQLQSASSTG 334
+VGCGG A +Q+ +ASSTG
Sbjct: 434 IVGCGGYADNQVAAASSTG 452
>SB_26630| Best HMM Match : ig (HMM E-Value=0.0021)
Length = 333
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +2
Query: 308 QLQSASSTGRVNPGTPARKLRLHIQIPGSAPR-QSSVP**TVSGRARRVCRYPPSCWAAD 484
Q+Q ++ G PA L +Q+P S+ SS P T G+ C +AD
Sbjct: 102 QIQCRVNSKNYLIGQPASDTILKVQVPPSSVHIASSSPTVTEHGQVNLTC-------SAD 154
Query: 485 GRPACRFVWSRGTGST 532
G P F W G T
Sbjct: 155 GTPPPTFTWISSQGHT 170
>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 157 GH*PGKRVLWSCTRYISRYESDSNGDG 237
G+ PG+ W CT +++RY N G
Sbjct: 321 GNAPGQYTGWPCTYWVARYREHGNMSG 347
>SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072)
Length = 263
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 167 PENGFFGVAPGTSAATNPIAMATVFKNTVSLTWRKH 274
P N FF A G NPI + F T S W+K+
Sbjct: 82 PCNDFFQYACGGWMKNNPIPSSEAFWGTFSWLWKKN 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,452,759
Number of Sequences: 59808
Number of extensions: 729717
Number of successful extensions: 2230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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