Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0163
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   4.0  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   9.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.3  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   9.3  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 648 SPQRSRVTMSLRPLFPGTLGVSNEKNPKKFNL 553
           +PQ S   M L+P  PG +G++N KN   FN+
Sbjct: 161 TPQLSYDLM-LKPYVPGFVGMNNIKNNDYFNV 191


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/51 (25%), Positives = 19/51 (37%)
 Frame = +2

Query: 608 NGLRDMVTLLRWGEXGTPEPWEVNPXQRDLWRGXSAWXPLLVXLXSXFIPR 760
           N L   VT   WG    PE W     ++  ++  S W      + + F  R
Sbjct: 348 NSLSRRVTSATWGNRQKPEKWNAMDTEK-FYKALSQWGTDFALIANMFPTR 397


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 269 TDYLDATEEGPVCYQTD-VLYGSLMKPHGMDEACIYANIHVPLNA 400
           TD  D +++  V   TD +LY   + PH      +Y + H P+ A
Sbjct: 800 TDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYYSDHRPIYA 844


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -3

Query: 672 SQGSGVPSSPQRSRVTMSLRPLFPGTLGVSNEKNPKKFNL*LKVMTTTFLVD 517
           S+G    S    S  T S R L  G   +S + NPK       ++ + F+ D
Sbjct: 753 SEGKSTSSLSSPSHSTSSKRDLLSGLESLSLKTNPKSEQCLESLLNSQFITD 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,868
Number of Sequences: 5004
Number of extensions: 58706
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)