Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0163
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesteras...    30   2.0  
At4g30940.1 68417.m04393 potassium channel tetramerisation domai...    29   4.6  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    29   4.6  
At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro ami...    28   6.1  
At2g13290.2 68415.m01465 glycosyl transferase family 17 protein ...    28   6.1  
At2g13290.1 68415.m01464 glycosyl transferase family 17 protein ...    28   6.1  
At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr...    28   8.1  
At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein / ...    28   8.1  

>At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesterase /
           acyl-ACP thioesterase / oleoyl-[acyl-carrier protein]
           hydrolase / S-acyl fatty acid synthase thioesterase
           identical to acyl-(acyl carrier protein) thioesterase
           [Arabidopsis thaliana] GI:804948
          Length = 412

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 718 PSAXAPPKVTLXRINLPRLWRSXFTPTE-QSHHVPKTIVS 602
           P+A APPK+   ++ LP       T TE  SH  P+T ++
Sbjct: 48  PNAQAPPKINGKKVGLPGSVDIVRTDTETSSHPAPRTFIN 87


>At4g30940.1 68417.m04393 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 441

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 62  RGLSKGILKPSSVAAVVVQC-GRADGVRLGVWPYSPGGSKHFIRQFPGSAL 211
           +  S G L  S  + +   C GR++   +GVW  S G    F  + PG +L
Sbjct: 209 KSYSAGALSFSPDSKIFTSCKGRSNEYGIGVWDQSTGKQVDFFYESPGWSL 259


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 717 QALWPRQRSRXXGLTSQGSGVPSS 646
           Q LWPR R+   G ++ G  +PSS
Sbjct: 503 QVLWPRSRTNIFGSSATGLSLPSS 526


>At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro
           aminopeptidase 2 [Lycopersicon esculentum] GI:15384991;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 634

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 271 RLPRCHRGRSSLLPDRRSLWKSNETSRHG*GMHLRQYTCAFERP 402
           R P+   G +  +  R  LWK     RHG G  +  Y C  E P
Sbjct: 472 RFPKGTNGYTLDILARAPLWKYGLDYRHGTGHGVGSYLCVHEGP 515


>At2g13290.2 68415.m01465 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 364 MHLRQYTCAFERPAGSW*XAYEAWSSNXSLYSRRW 468
           + +R+Y  +FE P       Y +W ++  +YSR+W
Sbjct: 216 LEMREYMYSFEFPVD-----YSSWRASVHIYSRKW 245


>At2g13290.1 68415.m01464 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 361

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 364 MHLRQYTCAFERPAGSW*XAYEAWSSNXSLYSRRW 468
           + +R+Y  +FE P       Y +W ++  +YSR+W
Sbjct: 216 LEMREYMYSFEFPVD-----YSSWRASVHIYSRKW 245


>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 454 KDXYWKTRLRRRXTSCRQGVQRHMYIGVDACLIHAVRFH*TSIKNVCLV 308
           ++ +WK   RR      Q  ++H+Y+  D   +  +R   TS+ N  LV
Sbjct: 110 RERFWKKNNRRYLADSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLV 158


>At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein /
           anther-specific protein (A6) identical to probable
           glucan endo-1,3-beta-glucosidase A6 precursor SP:Q06915
           from [Arabidopsis thaliana]
          Length = 478

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 353 MDEACIYANIHVPLNALPAAGXTPTKPGLPIXVFI 457
           ++ A    N+   ++A P  G TP++PGLPI  F+
Sbjct: 297 LNAATYNRNLIKKMSASPPIG-TPSRPGLPIPTFV 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,655
Number of Sequences: 28952
Number of extensions: 326437
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)