Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0162
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    29   3.9  
03_01_0259 - 1996427-1998772                                           28   6.9  

>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 171  NHINVSVDTEKLQNCVCNRK-INYLSFIKLVKNSIANNIVIRIISKIEDSLHY 326
            NH++ S++   L+NC+ + K  N   F +  K + AN+    +IS+++D   Y
Sbjct: 1130 NHMSASINVVILENCLADLKDKNVDLFNECQKFAEANHAAEMLISQMKDEARY 1182


>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 377 HC--IMSYVGXRGNKERPSVM*AIFYFTNNPNDNVVGYRIFDKLNKRKVI 234
           HC  I SY+   G  E   +M A+ +      D V    IFDK+  + VI
Sbjct: 429 HCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVI 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,809,177
Number of Sequences: 37544
Number of extensions: 309559
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)