Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0162
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_45701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            29   5.3  

>SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 601 AGKWRDHL*YWTWRRWSGA*QRMNTMASLANASISLVG 714
           +GK +DH     W+  SG    MN    ++N +I L+G
Sbjct: 286 SGKLKDHFPLVVWQTGSGTQSNMNVNEVISNRAIELMG 323


>SB_45701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 559 HQHLDSPSPSSL*YWNNCFAFYEGFI 482
           H HLD   P  L +W  C+  Y GF+
Sbjct: 185 HYHLDLGLPDHLIFWAACYLAYFGFL 210


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 564 ILISIWTHHHHLPSNTGIIV 505
           I+I I  HHHH PS++ II+
Sbjct: 242 IIIIIIIHHHHHPSSSSIII 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,664,341
Number of Sequences: 59808
Number of extensions: 365813
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)