Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0162
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46240.1 68418.m05691 inward rectifying potassium channel (KA...    29   2.5  
At1g65900.1 68414.m07478 expressed protein                             29   3.3  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   10.0 

>At5g46240.1 68418.m05691 inward rectifying potassium channel (KAT1)
           identical to K+ channel [Arabidopsis thaliana]
           gi|1165000|emb|CAA63601; Shaker-type channel (1P/6TM),
           PMID:11500563
          Length = 677

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 658 KPPTIFSMSNIIND-LAISQLQAFPIAVYGVTHTHQHLDSPSPSSL*YWNNCFAF 497
           K   IF + NI+N   AI  +  F +A Y  +H++  +DSP   ++ Y +  FAF
Sbjct: 87  KKDAIFIIDNIVNGFFAIDIILTFFVA-YLDSHSYLLVDSPKKIAIRYLSTWFAF 140


>At1g65900.1 68414.m07478 expressed protein
          Length = 408

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = +3

Query: 258 VKNSIANNIVIRIISKIEDS----LHYGRSFFV 344
           + N  +NN+ + IISK+ED+    ++YG++F V
Sbjct: 24  LSNGASNNVKVGIISKVEDATNFHIYYGQTFKV 56


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 574 GVTHTHQHLDSPSPSSL 524
           G +H   HL+SPSPSSL
Sbjct: 496 GGSHAANHLESPSPSSL 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,966
Number of Sequences: 28952
Number of extensions: 272242
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)