Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0160
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 29 0.97
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 28 1.7
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 5.2
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 5.2
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 5.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.8
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 26 6.8
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 9.0
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 9.0
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.0
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 28.7 bits (61), Expect = 0.97
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = -2
Query: 622 PSALKLASGTAAVSSHPLPALMNALFNSWTKYKNLS 515
PS L ++S + +++S P P++ ++ +S ++ KNLS
Sbjct: 563 PSYLSISSSSKSINSSPSPSIQLSVSSSISRDKNLS 598
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 200 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALCCPTELMRRNSPGQPTSQISLAFST- 27
SGY + R C RCH+ R+++ N+ + R C + +R S S F
Sbjct: 92 SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFCNDCKQVRHPSRSSDESADYHNFEVD 150
Query: 26 VTVRP 12
VT++P
Sbjct: 151 VTIKP 155
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 349 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 468
W + G + + + S S++ + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 310 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 408
+HP KF+V VGG+ ++ H K T S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 388 QKSTRMSFIRSVVDFLKKYDFDGLDLD 468
+ R F V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 368 LEPPSAQPPTATMNLTSGCLERRDVKLRKPLLSTSSS 258
+EPP+ P+A+ + E R+ + +P S SSS
Sbjct: 126 VEPPTDNKPSASTSTAVPTTEARNTSITEPANSPSSS 162
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 275 RVVSVTSHPSAPNTPMSSSWSRLAAGLKAAP 367
+ V SHPSAPN P + AGL AAP
Sbjct: 165 KFVPTHSHPSAPNKPPFET----VAGLFAAP 191
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 646 TALVHDIXPSALKLASGTAAVSSHPLPALMNALFNSWTK 530
++ +H I P L + + SSH +P L N F W K
Sbjct: 40 SSALHSITPRRESLNNSSPFNSSHQVPVLSN--FEEWIK 76
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 714 AKPAPITRAESYDIHVDSVQFLTQLWYMISXHQP 613
AK I +S+ H+ +QFLT++W ++ P
Sbjct: 668 AKQLCILEFQSFS-HISRIQFLTKIWDNLNRFSP 700
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 462 IQTVEVIFLQEVDNASD 412
+ TVE+ LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,585
Number of Sequences: 5004
Number of extensions: 67868
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -