Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0160
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 40 0.002
04_03_0649 - 18402976-18403220,18403305-18404499 37 0.015
10_08_0011 + 14088375-14089241 32 0.44
10_08_0009 + 14075929-14076789 31 1.3
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 3.1
11_04_0047 + 12787845-12788004,12788297-12788940 29 5.4
11_01_0051 + 391254-391343,391460-391862,392345-392352,393627-39... 29 5.4
10_08_0007 + 14044844-14045767 28 7.1
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 28 9.4
04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235 28 9.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 370 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 480
+S M ++K+ R +FI S ++ + FDGLDL W +P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Frame = +1
Query: 298 SLRSKHPDVKFMVAVG-GWAEGGSK----------YSHMVAQKSTRMSFIRSVVDFLKKY 444
++++K+ VK ++++G G GG+ ++ M A ++R +FI + V ++
Sbjct: 99 AVKAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVAREN 158
Query: 445 DFDGLDLDWEYPGAA 489
FDGLD+ W +P +A
Sbjct: 159 GFDGLDVAWRFPASA 173
>10_08_0011 + 14088375-14089241
Length = 288
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 250 YRPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSV 423
+ P D + ++++ HP+V MV +GG + + + + S + + SV
Sbjct: 57 FSPYWDTANLSPADVAAVKAAHPNVSVMVGLGGDSVQDTAKVFFSPTSVDSWVANAVASV 116
Query: 424 VDFLKKYDFDGLDLDWEY 477
+ Y DG+D+D+E+
Sbjct: 117 SGIIDAYGLDGVDVDYEH 134
>10_08_0009 + 14075929-14076789
Length = 286
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 304 RSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVD----FLKKYDFDGLDLDW 471
++ HP++ ++A+GG + + A S+ +++R+ D + Y DG+D+D+
Sbjct: 75 KAAHPNLSVILALGGDTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGLDGVDVDY 134
Query: 472 EY 477
E+
Sbjct: 135 EH 136
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 495 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 355
PV GT + V+ V I Q+ + E HP + G+H VL F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596
>11_04_0047 + 12787845-12788004,12788297-12788940
Length = 267
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 356 SAQPPTATMNLTSGCLERRDVKLRKPLLSTSSSG 255
S + TAT N C DV+L PL T SSG
Sbjct: 21 STRSSTATRNTKESCRSGPDVQLYTPLSPTCSSG 54
>11_01_0051 +
391254-391343,391460-391862,392345-392352,393627-393704,
395371-395763
Length = 323
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/88 (25%), Positives = 36/88 (40%)
Frame = -3
Query: 495 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAFSPAANRDHELDIG 316
PV+GT + ++ + + LQ + + E HP L G+ +L N D D G
Sbjct: 194 PVAGTKVYKLKYGSAVQVVLQGTNIFAGENHPIHLHGYDFYILAEGL---GNFDAGADTG 250
Query: 315 VFGAEGCEVTETTLIHVQLRTIMRTSLD 232
F E + T + V ++R D
Sbjct: 251 KFNVEDPPMRNTVGVPVNGWAVIRFVAD 278
>10_08_0007 + 14044844-14045767
Length = 307
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 298 SLRSKHPDVKFMVAVGGWAEGGSK-YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWE 474
S++ +P+V+ V++GG + ++ + S + + S+ ++ + DG+D+D+E
Sbjct: 95 SIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNAVESLTGIIQDNNLDGIDIDYE 154
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 284 SVTSHPSAPNTPMSSSWSRLAAGLKAAPST 373
S +S P+A ++P SSSW L + L AA S+
Sbjct: 15 SSSSSPTAASSPPSSSWIHLRSLLVAAASS 44
>04_04_1428 + 33522795-33523489,33525463-33525620,33525838-33526235
Length = 416
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 313 HPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSF 411
+P ++ A GG GG+ YSH A + +F
Sbjct: 93 YPTSHYLAAAGGAGGGGNPYSHFTAAAAAGSTF 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,149,490
Number of Sequences: 37544
Number of extensions: 538154
Number of successful extensions: 1496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -