Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0160
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   4e-14
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              73   3e-13
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              73   3e-13
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              69   6e-12
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   2e-11
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        66   4e-11
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   3.1  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   5.5  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   28   9.5  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
 Frame = +1

Query: 283 FRNFTSLRSKHPDVKFMVAVGGWA-EGG--SKYSHMVAQKSTRMSFIRSVVDFLKKYDFD 453
           ++    L+ K+P +K ++AVGGW  E G  S +S MVA KS R +FI S++    KYDFD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514

Query: 454 GLDLDWEYPGAADRG 498
           G DLDWEYP  A RG
Sbjct: 515 GFDLDWEYP--ASRG 527



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 30/44 (68%)
 Frame = +2

Query: 113 VCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKSSEV 244
           VCYF+NWA YRP   ++  +DI   LCTH++Y+F  +   ++++
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLLCTHIVYAFAKIDPATNKI 444


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = +1

Query: 271 DKSGFRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 444
           D   ++   +L+  +P +K  +AVGGW   E  S +S MVA K  R  FI+S ++ L+ +
Sbjct: 74  DHELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTH 133

Query: 445 DFDGLDLDWEYPG 483
            FDGLDLDWEYPG
Sbjct: 134 GFDGLDLDWEYPG 146



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
 Frame = +1

Query: 283 FRNFTSLRSKHPDVKFMVAVGGWA--EGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDG 456
           ++   +L+  +P +K  +AVGGW   E  S +S MVA K  R  FI+S ++ L+   FDG
Sbjct: 463 YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDG 522

Query: 457 LDLDWEYPG 483
           LDLDWEYPG
Sbjct: 523 LDLDWEYPG 531



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 14  DEP*PLKMRAIFA-TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDL 190
           D P P     I A  LA+L  C          R VCY++NW+ YRP  G +  EDI   L
Sbjct: 376 DGPLPPNTSLIMARVLAILILCFVPFAVSEYVR-VCYYTNWSQYRPKGGTFWPEDIDPHL 434

Query: 191 CTHLIYSF 214
           CTH+I+SF
Sbjct: 435 CTHVIHSF 442



 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 26/63 (41%), Positives = 38/63 (60%)
 Frame = +2

Query: 56  LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 235
           LAVL  CA  V +    R  CY++NW+ YRP  G +  EDI   LCTH+++SF  V + +
Sbjct: 7   LAVLG-CALSVTASEYVR-GCYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTT 64

Query: 236 SEV 244
            ++
Sbjct: 65  HKL 67


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = +1

Query: 271 DKSGFRNFTSLRSKHPDVKFMVAVGGW--AEGGSKYSHMVAQKSTRMSFIRSVVDFLKKY 444
           D   +  F +L+ K+P++K ++AVGGW      S +S MV   +TR  FI SV+  L+ +
Sbjct: 71  DDKLYPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTW 130

Query: 445 DFDGLDLDWEYPGAADRG 498
            FDGLDLDWEYP  A RG
Sbjct: 131 GFDGLDLDWEYP--ATRG 146



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/61 (47%), Positives = 38/61 (62%)
 Frame = +2

Query: 53  TLAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEK 232
           TL VLA  A    +  R   VCY +NW+ YR G  ++  EDIP DLCTHL+YSF  + +K
Sbjct: 5   TLLVLAVAACATGNYVR---VCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAKINQK 61

Query: 233 S 235
           +
Sbjct: 62  N 62


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = +1

Query: 271 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSK--YSHMVAQKSTRMSFIRSVVDFLKKY 444
           D   ++ F  L+ K+P +K ++AVGGW     K  +S MV   ++R  FI S +  L+++
Sbjct: 183 DDKLYKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQW 242

Query: 445 DFDGLDLDWEYPG 483
           +FDG DLDWEYPG
Sbjct: 243 NFDGFDLDWEYPG 255


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = +1

Query: 271 DKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDF 450
           D + ++    L+S   ++K ++AVGGW  G   +  MV+  S R  FI   + FL+ + F
Sbjct: 74  DAAMYKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMF 132

Query: 451 DGLDLDWEYPGA 486
           DGLDLDWEYPGA
Sbjct: 133 DGLDLDWEYPGA 144



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 24/63 (38%), Positives = 40/63 (63%)
 Frame = +2

Query: 56  LAVLASCAALVQSDSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGVTEKS 235
           L +L   ++L  S S  R VCY++NWA YR G+ +Y  ++I   LCTH++Y+F  +   +
Sbjct: 7   LPLLVVPSSLFASASYFR-VCYYTNWAQYR-GLAKYTPDNIDPSLCTHIVYAFAKMNADN 64

Query: 236 SEV 244
           S++
Sbjct: 65  SKL 67


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/68 (44%), Positives = 42/68 (61%)
 Frame = +1

Query: 283 FRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLD 462
           ++    L+S   ++K ++AVGGW  G   +  MV+  S R  FI   + FL+ + FDGLD
Sbjct: 2   YKKVNDLKSSS-NMKTLLAVGGWNMGSGPFQDMVSTASRRKIFIDDAILFLRNHMFDGLD 60

Query: 463 LDWEYPGA 486
           LDWEYPGA
Sbjct: 61  LDWEYPGA 68


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = +1

Query: 229 EIKRSS--HYRPELDVDKSGFRNFTSLRSKHPDVKFMVAVGGWAEGGSKYSHMVAQKSTR 402
           ++K SS  +Y+   D+  S  +NFT+    +PDV F   V G  +G S  +H  A+ S  
Sbjct: 251 DLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNPDVSFKFLVYG-DQGISADAHNTARYSLE 309

Query: 403 MSFIRSVVDFLKKYDF---DGLDLDWE 474
               R+    +   D    +G    WE
Sbjct: 310 EILYRNATMVIHLGDIAYAEGYAYQWE 336


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 251  IVLSWTWIRVVSVTSHPSAPNTPMSSSWSRLAAGLKAAPSTHTWWPRRALGCPSSEALST 430
            I+ S T     S+   P+    P+  +W+   + L   PS  T     A   P+S  +S 
Sbjct: 1339 ILASHTSFGTESLAPSPTPSKEPLGGTWANTRSSLTTTPSFPTTSLMLAPVTPASLIISQ 1398

Query: 431  S*RNMTST 454
            + +N TS+
Sbjct: 1399 ATKNATSS 1406


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 84   NAAQLARTANV-ANIARIFNGYGSSV 10
            N+ Q AR A+  A+IA +FNGY SSV
Sbjct: 1439 NSTQPARLASTPASIASLFNGYFSSV 1464


>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 84  NAAQLARTANV-ANIARIFNGYGSSV 10
           N+ Q AR A+  A+IA +FNGY SSV
Sbjct: 350 NSTQPARLASTPASIASLFNGYFSSV 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,441,106
Number of Sequences: 59808
Number of extensions: 564726
Number of successful extensions: 1605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)