Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0155
         (782 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   2.0  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            25   3.5  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.6  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 331  FGHLVH-ALGRAAGGAKLPSAGLCLNALRPKP 239
            +  L+H A+G   GG  L   G CL   R  P
Sbjct: 936  YSFLMHTAVGHGGGGQSLSGPGSCLEDFRATP 967


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -1

Query: 272 GIMPERSKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSM 96
           G  PE+ +  +   +  +     + R   GSK     S  + S+ E  RR+P    RSM
Sbjct: 83  GKKPEKDRKPSDEDDDDEGDEANDARPRFGSKAAAANSSATSSESEDERRTPPQDMRSM 141


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +1

Query: 124 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALERSGIIPRMVASHHR 297
           RRR   +  E    +SHC+E         S    +  R    L RS +  ++ AS  R
Sbjct: 268 RRRAYWWTTEIAQCRSHCIEARRKMNRAKSSEQREDLRRLYILARSNLKRKIKASKRR 325


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,083
Number of Sequences: 2352
Number of extensions: 17452
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)