Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0155
         (782 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    38   0.054
BC016757-1|AAH16757.1|  220|Homo sapiens Sin3A-associated protei...    31   6.2  
AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.              31   6.2  
AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.        31   6.2  
AF055993-1|AAC33316.1|  220|Homo sapiens mSin3A associated polyp...    31   6.2  
AB127405-1|BAD03968.1| 1183|Homo sapiens SNAP-25-interacting pro...    31   6.2  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 37.5 bits (83), Expect = 0.054
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 482 MIGRADIEGQKFNVAMNAW 538
           MIGRADIEG K +VAMNAW
Sbjct: 1   MIGRADIEGSKSDVAMNAW 19



 Score = 35.1 bits (77), Expect = 0.29
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +3

Query: 543 PQASYPCGNFSGHSLLKTLYTKG 611
           PQASYPCGNFS  S LK   ++G
Sbjct: 21  PQASYPCGNFSDTSCLKPKRSEG 43


>BC016757-1|AAH16757.1|  220|Homo sapiens Sin3A-associated protein,
           30kDa protein.
          Length = 220

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 307 GRAAG-GAKLPSAGLCLNALRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 137
           G  AG GA++P AG    A  P  A P P ++C L     R   A  N +     +   +
Sbjct: 35  GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94

Query: 136 RRDVEAHLDRGDR 98
           ++ V+  LD+  R
Sbjct: 95  QKKVKIELDKSAR 107


>AY750848-1|AAU81930.1| 1032|Homo sapiens RTN3-A1 protein.
          Length = 1032

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -1

Query: 287 EATIRGIMPERSKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 126
           E   +GI+     A  +++E   D  T  P       ESGGS+  D  S+ S   +ET  
Sbjct: 660 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 719

Query: 125 RSPFG 111
             P G
Sbjct: 720 SEPLG 724


>AY427821-1|AAR02474.1| 1013|Homo sapiens reticulon 3-A protein.
          Length = 1013

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -1

Query: 287 EATIRGIMPERSKAEASLAESGKDMLTVEP------RESGGSKQCDFTSRVSHSKRETRR 126
           E   +GI+     A  +++E   D  T  P       ESGGS+  D  S+ S   +ET  
Sbjct: 641 ETRDKGIVDSERNAFKAISEKMTDFKTTPPVEVLHENESGGSEIKDIGSKYSEQSKETNG 700

Query: 125 RSPFG 111
             P G
Sbjct: 701 SEPLG 705


>AF055993-1|AAC33316.1|  220|Homo sapiens mSin3A associated
           polypeptide p30 protein.
          Length = 220

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 307 GRAAG-GAKLPSAGLCLNALRPKPA*PNPARICSLWSPESR--EALNNVTLLVAFRIQNA 137
           G  AG GA++P AG    A  P  A P P ++C L     R   A  N +     +   +
Sbjct: 35  GTGAGTGAEVPGAGAVSAAGPPGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSIS 94

Query: 136 RRDVEAHLDRGDR 98
           ++ V+  LD+  R
Sbjct: 95  QKKVKIELDKSAR 107


>AB127405-1|BAD03968.1| 1183|Homo sapiens SNAP-25-interacting
           protein protein.
          Length = 1183

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = -1

Query: 437 RERELGLDRRETG*FYPTDGLSLR*XYCSVREEPQFRTFGSCTRPSGRWCEATIRGIMPE 258
           R+R+  +D  ++   YP   L+LR     +RE+P + +F   TR S R  +    G+  +
Sbjct: 78  RKRDAFMDHLKSK--YPQHALALRGQQDRMREQPNYWSFK--TR-SSRHTQGAQPGLADQ 132

Query: 257 RSKAEASLAESGKDMLTVEPRESGGSKQCDFTSR--VSHSKRETRRRSP 117
            +K   + AES + M   E    G S+   F     +S S  +T+ RSP
Sbjct: 133 AAKLSYASAESLETMSEAE-LPLGFSRMNRFRQSLPLSRSASQTKPRSP 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,522,968
Number of Sequences: 237096
Number of extensions: 2485972
Number of successful extensions: 5181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5181
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)