Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0154
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    45   9e-06
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    37   0.003
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    36   0.007
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    34   0.022
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    30   0.36 
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    29   0.63 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   2.6  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   3.4  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   4.5  
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    26   4.5  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   5.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   7.8  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = -1

Query: 456 CYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVNE------QFCPLCNKKGHTA 301
           CY C + GHKA  C    + + C  C  AGH+  DC +         C  C + GH A
Sbjct: 38  CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCV---NEQFCPLCNKKGH 307
           RCY C + GH+A  C    +   C  C++ GH A +C     E+ C  C   GH
Sbjct: 18  RCYNCGENGHQAREC---TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGH 68



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDC---VNEQFCPLCNKKGHTA 301
           + CY C  YGH+A +C        C  C + GH + +C    + Q C  CN+ GH A
Sbjct: 116 MNCYACGSYGHQARDC---TMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIA 169



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
           ++CY C K GH++  C      + C +C++ GH+A +C +
Sbjct: 135 VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTS 174



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
 Frame = -1

Query: 456 CYRCWKYGHKADNCD----------GEDRSRA-CRRCSEAGHMAGDCVNEQFCPLCNKKG 310
           CY+C + GH A +C           G  RS   C  C   GH A DC     C  C K G
Sbjct: 85  CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIG 144

Query: 309 H 307
           H
Sbjct: 145 H 145



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 390 CRRCSEAGHMAGDCVNEQFCPLCNKKGHTA 301
           C  C E GH A +C     C  CN+ GH A
Sbjct: 19  CYNCGENGHQARECTKGSICYNCNQTGHKA 48


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
 Frame = -1

Query: 498 LNICHIYERIELLRCYRCWKYGHKADNCDGE-----DRSRACRRCSEAGHMAGDC--VNE 340
           LN C     ++  +C+ C + GH +  C+        +   C+ CS   H+A DC  VN+
Sbjct: 112 LNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171

Query: 339 QFCPLCNKKGHTAGTSGC--SLFREALETASED*PIKKMVFK 220
                 +  G  AGT+G    ++ E  +T +   P KK   K
Sbjct: 172 DDVSFGHVVG-VAGTTGADEDVYHEYAKTVAA--PTKKRPVK 210



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -1

Query: 405 DRSRACRRCSEAGHMAGDCV----NEQFCPLCNKKGHT 304
           +R + C  C + GH+  DC     N   C  C  K H+
Sbjct: 74  NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHS 111


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKK 313
           RC RC K      +  G DR R C RC +AG  + DC+++   P+ N +
Sbjct: 341 RCSRCKK------SKKGCDRQRPCGRCRDAGLNSEDCISDDDMPVSNAR 383


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -1

Query: 456 CYRCWKYGHKADNCD---GEDRSRACRRCSEAGHMAGDC-VNEQFCPLCN 319
           C  C   GH+  +C        +  CR C   GH+A DC V +Q  P+ +
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQPPMAD 360



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = -1

Query: 408 EDRSRACRRCSEAGHMAGDC---VNEQF---CPLCNKKGHTA 301
           +D ++ C+ C   GH   DC   +N      C  C   GH A
Sbjct: 305 DDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIA 346


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 27/105 (25%), Positives = 49/105 (46%)
 Frame = -1

Query: 414 DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSGCSLFREALETASED*PIK 235
           D  ++SRAC    +A  +  + +NE+   + +KKG     +  S     LE       ++
Sbjct: 259 DPSNKSRACEHVEKAAEILKNVLNERENEVTDKKGKGKQKAEESTLTSDLEN------LR 312

Query: 234 KMVFKVLQINIDRGKAAHDLLLATASSMSADLVMLSEPNRKLAKA 100
           +M+ ++ Q  +D    A  L  A  S M  +  +LS+ +  LA+A
Sbjct: 313 EMLSELEQKTLDLKHGAPSLEEAVMSKMH-ESSLLSKDSSSLAQA 356


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -1

Query: 609 GDKITETRWAVENQTATVILDEEDARKVACGW*GRVGLNICHIYERIELLRCYRCWKY 436
           G+++T  R A  +  A+  L +ED+  +     G+V   + H +  +  +R  R W +
Sbjct: 108 GNELTSRRTAAASALASSYLSKEDSTSLLIIGSGKVAEKLIHAHCSVRPIRSVRIWNH 165


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 420  NCDGEDRSRACRRCSEAGHMAGDCVNEQFCPL 325
            N +GE R    R+CS  G + G     + CPL
Sbjct: 934  NLNGEGRKPTTRKCSNCGQV-GHMKTNKICPL 964


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 508 SLPPASNLPGILFIQDHRCRLVFHRPSGLSDLISKLSTFFIKFVDXKSSLTSSISNEL 681
           SLPP+S+   +   Q   C+L+F   S  S ++SK   FF      + S  SS+  EL
Sbjct: 585 SLPPSSHTCAL---QAMYCQLIFSNTSVPSAIVSKCVAFFWNAAKKQHS-KSSVHAEL 638


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/94 (26%), Positives = 43/94 (45%)
 Frame = +1

Query: 403 ILAVAVIRFVAIFPAPVTSQQFYSFIYVAYIEPYSSLPPASNLPGILFIQDHRCRLVFHR 582
           IL+  +   + +F APV  Q+F  ++ V  + P   LP ++   GI F   H   ++ H 
Sbjct: 392 ILSQTINSNIVLF-APVVFQKFQEYMAVRLLNPNFELPESN---GIEFA--HEDSVLGHS 445

Query: 583 PSGLSDLISKLSTFFIKFVDXKSSLTSSISNELV 684
              L++  + L  +    V   +    S+SNE V
Sbjct: 446 KPSLTEFHAILGLY--SLVISYNHFEGSLSNEYV 477


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 512 YHPQATFLASSSSRITVAVWFSTAHR 589
           Y P   FLAS     T+ +W ST+++
Sbjct: 229 YSPNGVFLASCGRDKTIRIWDSTSNK 254


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 318 YYTGDRIAHLRNLRPYGPLP 377
           +  GD IAH  + R YGP+P
Sbjct: 109 WLAGDNIAHSLDSRNYGPVP 128


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3   NSARAPYKFQKPSVFY*EELGL-HLPWCHTP 92
           +S  A     K  + Y E+ G  HLPW H P
Sbjct: 312 HSLAASLFLNKSQIHYFEDFGYYHLPWYHCP 342


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -1

Query: 213 QIN-IDRGKAAHDL-LLATASSMSADLVMLSEPNRKLAKAAGWECDTRGDAALVLLNKTL 40
           QIN  +  KA  +L  ++  SS +++ V   EP+  LAKA+  +  T  +   +L+   +
Sbjct: 201 QINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQNDLRILIKLDI 260

Query: 39  TVSEI 25
           T+  +
Sbjct: 261 TIGRL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,482
Number of Sequences: 5004
Number of extensions: 57786
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)