Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0154
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 43 2e-04
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 43 2e-04
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 43 2e-04
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 41 7e-04
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 41 7e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 40 0.001
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 40 0.001
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 40 0.002
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.016
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.016
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 37 0.016
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.15
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.15
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.15
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 33 0.25
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 33 0.25
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 33 0.25
Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 7.2
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 7.2
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 9.6
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 27 9.6
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.6
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.6
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++++C E R C C + GH + DC E+ P + G T G+SG
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER-KPREGRNGFTGGSSG 316
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++++C E R C C + GH + DC E+ P + G T+G G
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER-KPREGRNGFTSGFGG 430
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
++C+ C GH++ C + R C C E GH + +C N
Sbjct: 453 MKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN 490
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = -1
Query: 438 YGHKADNCDGEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
+G D +R+ C C + GH + DC + C C + GH +
Sbjct: 243 FGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 294
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = -1
Query: 438 YGHKADNCDGEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
+G D +R+ C C + GH + DC + C C + GH +
Sbjct: 357 FGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 408
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++++C E R C C + GH + DC E+ P + G T G+SG
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER-KPREGRNGFTGGSSG 316
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++++C E R C C + GH + DC E+ P + G T+G G
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER-KPREGRNGFTSGFGG 430
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
++C+ C GH++ C + R C C E GH + +C N
Sbjct: 453 MKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN 490
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = -1
Query: 438 YGHKADNCDGEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
+G D +R+ C C + GH + DC + C C + GH +
Sbjct: 243 FGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 294
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = -1
Query: 438 YGHKADNCDGEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
+G D +R+ C C + GH + DC + C C + GH +
Sbjct: 357 FGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 408
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++++C E R C C + GH + DC E+ P + G T G+SG
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER-KPREGRNGFTGGSSG 316
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---DGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++++C E R C C + GH + DC E+ P + G T+G G
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER-KPREGRNGFTSGFGG 430
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
++C+ C GH++ C + R C C E GH + +C N
Sbjct: 453 MKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN 490
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = -1
Query: 438 YGHKADNCDGEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
+G D +R+ C C + GH + DC + C C + GH +
Sbjct: 243 FGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 294
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Frame = -1
Query: 438 YGHKADNCDGEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
+G D +R+ C C + GH + DC + C C + GH +
Sbjct: 357 FGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNS 408
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRA-CRRCSEAGHMAGDCVNEQF-------CPLCNKKGH 307
C C GH A +CD R CR C + GH A DC NE+ C C ++GH
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGH 675
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSR-ACRRCSEAGHMAGDC----VNEQFCPLCNKKGHTA 301
C+ C + GH + CD R CR C + GH A DC V C C +GH A
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFA 628
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 420 NCDGEDRSRACRRCSEAGHMAGDCVNEQF----CPLCNKKGHTA 301
N DG +R R C C E GH++ +C + C C + GH A
Sbjct: 562 NWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFA 605
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGE----DRSRACRRCSEAGHMAGDC 349
C C + GH A +C E + + CRRC+E GH +C
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRA-CRRCSEAGHMAGDCVNEQF-------CPLCNKKGH 307
C C GH A +CD R CR C + GH A DC NE+ C C ++GH
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGH 675
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSR-ACRRCSEAGHMAGDC----VNEQFCPLCNKKGHTA 301
C+ C + GH + CD R CR C + GH A DC V C C +GH A
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFA 628
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 420 NCDGEDRSRACRRCSEAGHMAGDCVNEQF----CPLCNKKGHTA 301
N DG +R R C C E GH++ +C + C C + GH A
Sbjct: 562 NWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFA 605
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGE----DRSRACRRCSEAGHMAGDC 349
C C + GH A +C E + + CRRC+E GH +C
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
C+ C KYGH+A C R C C + H A +C +
Sbjct: 204 CFNCKKYGHRATECSAPQRE--CANCGDPNHRANECAS 239
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
C+ C KYGH+A C R C C + H A +C +
Sbjct: 204 CFNCKKYGHRATECSAPQRE--CANCGDPNHRANECAS 239
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 459 RCYRCWKYGHKADNC--DGEDRSRACRRCSEAGHMAGDCVNE 340
+CY C + GH + C G + C +C E GH++ DC ++
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQ 149
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Frame = -1
Query: 456 CYRCWKYGHKADNC-----DGEDRS----RACRRCSEAGHMAGDC 349
CY+C + GH + NC DG R C C E GH + DC
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDG---EDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++ +C E R C C + GH + +C E+ ++G T G G
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER----KPREGRTGGFGG 214
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
++C+ C GH++ C + R C C E GH + +C N
Sbjct: 242 MKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN 279
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = -1
Query: 411 GEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
G +R+ C C + GH + DC + C C + GHT+
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTS 195
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDG---EDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++ +C E R C C + GH + +C E+ ++G T G G
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER----KPREGRTGGFGG 214
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
++C+ C GH++ C + R C C E GH + +C N
Sbjct: 242 MKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN 279
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = -1
Query: 411 GEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
G +R+ C C + GH + DC + C C + GHT+
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTS 195
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDG---EDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+ C + GH++ +C E R C C + GH + +C E+ ++G T G G
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER----KPREGRTGGFGG 214
Score = 36.3 bits (80), Expect = 0.021
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 462 LRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
++C+ C GH++ C + R C C E GH + +C N
Sbjct: 242 MKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN 279
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = -1
Query: 411 GEDRSRACRRCSEAGHMAGDCV------NEQFCPLCNKKGHTA 301
G +R+ C C + GH + DC + C C + GHT+
Sbjct: 153 GGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTS 195
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 462 LRCYRCWKYG-HKADNCDG-EDRSRACRRCSEAGHMAGDC 349
LRC+RC K+ HKA +C + ++ C C H++ C
Sbjct: 111 LRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 150
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 462 LRCYRCWKYG-HKADNCDG-EDRSRACRRCSEAGHMAGDC 349
LRC+RC K+ HKA +C + ++ C C H++ C
Sbjct: 142 LRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 462 LRCYRCWKYG-HKADNCDG-EDRSRACRRCSEAGHMAGDC 349
LRC+RC K+ HKA +C + ++ C C H++ C
Sbjct: 142 LRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 462 LRCYRCWKYG-HKADNCDG-EDRSRACRRCSEAGHMAGDC 349
LRC+RC K+ HKA +C + ++ C C H++ C
Sbjct: 142 LRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDC 349
+C C + G +C + ++RAC RC+E GH+A +C
Sbjct: 655 KCDECQQSGWHMASCF-KLKNRACFRCNEMGHIAWNC 690
Score = 28.3 bits (60), Expect = 5.5
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSE---AGHMAGDC--VNEQFCPLCNKKGHTAGT 295
RC C + G C + + A ++C E +G C + + C CN+ GH A
Sbjct: 630 RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAW- 688
Query: 294 SGCSLFREALETASED*PIKKMVFKVLQINIDRGKAAHDLLLATASSMSADLVMLSEPNR 115
C E T+ ++ P+ K + G D LL S S V S
Sbjct: 689 -NCPKKNE--NTSEKEAPVAK-------VETIEGVRMKDCLLMVKSEKSESEVTRSLEKG 738
Query: 114 KLAKA 100
++ KA
Sbjct: 739 QIGKA 743
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDC 349
+C C + G +C + ++RAC RC+E GH+A +C
Sbjct: 558 KCDECQQSGWHMASCF-KLKNRACFRCNEMGHIAWNC 593
Score = 28.3 bits (60), Expect = 5.5
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSE---AGHMAGDC--VNEQFCPLCNKKGHTAGT 295
RC C + G C + + A ++C E +G C + + C CN+ GH A
Sbjct: 533 RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAW- 591
Query: 294 SGCSLFREALETASED*PIKKMVFKVLQINIDRGKAAHDLLLATASSMSADLVMLSEPNR 115
C E T+ ++ P+ K + G D LL S S V S
Sbjct: 592 -NCPKKNE--NTSEKEAPVAK-------VETIEGVRMKDCLLMVKSEKSESEVTRSLEKG 641
Query: 114 KLAKA 100
++ KA
Sbjct: 642 QIGKA 646
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDC 349
+C C + G +C + ++RAC RC+E GH+A +C
Sbjct: 569 KCDECQQSGWHMASCF-KLKNRACFRCNEMGHIAWNC 604
Score = 28.3 bits (60), Expect = 5.5
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSE---AGHMAGDC--VNEQFCPLCNKKGHTAGT 295
RC C + G C + + A ++C E +G C + + C CN+ GH A
Sbjct: 544 RCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAW- 602
Query: 294 SGCSLFREALETASED*PIKKMVFKVLQINIDRGKAAHDLLLATASSMSADLVMLSEPNR 115
C E T+ ++ P+ K + G D LL S S V S
Sbjct: 603 -NCPKKNE--NTSEKEAPVAK-------VETIEGVRMKDCLLMVKSEKSESEVTRSLEKG 652
Query: 114 KLAKA 100
++ KA
Sbjct: 653 QIGKA 657
>Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical
protein C07A9.8 protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = -2
Query: 671 EMEEVREDXKSTNLIKKVDSLEIRSLRPDGRWKTRRQR*SWMKRMPGRLLAGGKE 507
++ EV+ D + +K +DS + RSL+ + + S++K+ +++A GK+
Sbjct: 371 QLPEVKPDVFTGGSVKPLDSDDTRSLKYHFGSAAQMEEISYLKKEENKMIAAGKK 425
>Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical
protein T06D8.5 protein.
Length = 395
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 111 IFYWVQIASLDPRSYCSQLPEVGRARLSLGLYLSVTL*KPFF 236
I +W+ + LDP S +P V + RL+ L ++ L FF
Sbjct: 181 IGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTMAFVLYSIFF 222
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -1
Query: 459 RCYRCWKYGHKADNC-DGEDRSRA--CRRCSEAGHMAGDCVN 343
RC C HK+ C D + + C C GH++ DC N
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKN 470
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -1
Query: 459 RCYRCWKYGHKADNC-DGEDRSRA--CRRCSEAGHMAGDCVN 343
RC C HK+ C D + + C C GH++ DC N
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKN 470
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 405 DRSRACRRCSEAGHMAGD 352
+ ++ACRRCSEA H D
Sbjct: 1640 EAAQACRRCSEADHHPSD 1657
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 417 CDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+G R C +C+ + DC + C L KG T ++G
Sbjct: 631 CNGNFTGRTCDKCAAGFYNYPDCRGCE-CLLSGAKGQTCDSNG 672
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 417 CDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+G R C +C+ + DC + C L KG T ++G
Sbjct: 631 CNGNFTGRTCDKCAAGFYNYPDCRGCE-CLLSGAKGQTCDSNG 672
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 390 CRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSGCS 283
C R + G + DC N CPL + A + CS
Sbjct: 520 CTRTLDCGRIGVDCNNGACCPLPTCPNNIASSQRCS 555
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 405 DRSRACRRCSEAGHMAGD 352
+ ++ACRRCSEA H D
Sbjct: 1640 EAAQACRRCSEADHHPSD 1657
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 417 CDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+G R C +C+ + DC + C L KG T ++G
Sbjct: 631 CNGNFTGRTCDKCAAGFYNYPDCRGCE-CLLSGAKGQTCDSNG 672
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 417 CDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSG 289
C+G R C +C+ + DC + C L KG T ++G
Sbjct: 631 CNGNFTGRTCDKCAAGFYNYPDCRGCE-CLLSGAKGQTCDSNG 672
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,308
Number of Sequences: 27780
Number of extensions: 342527
Number of successful extensions: 1036
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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