Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0154
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 87  TPIQQLLPIFYWVQIASLDPRSYCSQLP 170
           TP+  +LP  +   ++ +DP  Y    P
Sbjct: 314 TPVSTMLPAVFAKTVSCIDPWIYAINHP 341


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 87  TPIQQLLPIFYWVQIASLDPRSYCSQLP 170
           TP+  +LP  +   ++ +DP  Y    P
Sbjct: 314 TPVSTMLPAVFAKTVSCIDPWIYAINHP 341


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 600 SYLQAVHFFYQVCRLXVLPYFLHF 671
           SYL+AV  F  VC + V    + +
Sbjct: 302 SYLKAVDAFMSVCTVFVFMALMEY 325


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 132 LSEPNRKLAKAAGWECDT 79
           L   NRKL   A W+ DT
Sbjct: 385 LDPSNRKLPAPANWKKDT 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,511
Number of Sequences: 438
Number of extensions: 4183
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)