Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0154
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 55 4e-08
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 44 1e-04
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 42 5e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 7e-04
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 41 7e-04
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 41 7e-04
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 41 7e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 41 7e-04
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 38 0.006
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 34 0.077
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 33 0.24
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 32 0.31
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 31 0.72
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.95
At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote... 31 0.95
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 27 1.0
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 30 1.3
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 29 2.9
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 29 2.9
At5g05640.1 68418.m00616 nucleoprotein-related contains weak sim... 29 2.9
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 26 3.8
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 29 3.8
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 29 3.8
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 29 3.8
At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ... 29 3.8
At1g18380.1 68414.m02296 expressed protein 29 3.8
At5g64120.1 68418.m08052 peroxidase, putative identical to perox... 28 5.1
At5g39970.1 68418.m04847 expressed protein low similarity to up-... 28 5.1
At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase f... 28 5.1
At5g64110.1 68418.m08051 peroxidase, putative similar to peroxid... 28 6.7
At5g25400.1 68418.m03013 phosphate translocator-related low siim... 28 6.7
At3g24620.1 68416.m03092 expressed protein contains Pfam profile... 28 6.7
At2g34780.1 68415.m04270 expressed protein 28 6.7
At5g54050.1 68418.m06722 DC1 domain-containing protein 27 8.9
At5g13810.1 68418.m01613 glutaredoxin family protein 27 8.9
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ... 27 8.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 8.9
At3g04440.1 68416.m00470 expressed protein contains Pfam domain,... 27 8.9
At3g03700.1 68416.m00373 expressed protein contains Pfam domain,... 27 8.9
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa... 27 8.9
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = -1
Query: 468 ELLRCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTA 301
+L C C+K GH A +C + +AC+ C +GH+A DC N+ C +C+ GH A
Sbjct: 136 DLRLCNNCFKQGHLAADCTND---KACKNCRTSGHIARDCRNDPVCNICSISGHVA 188
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/52 (44%), Positives = 25/52 (48%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTA 301
C C GH A C E R C C E GH+A +C NE C C K GH A
Sbjct: 76 CNNCGLPGHIAAECTAESR---CWNCREPGHVASNCSNEGICHSCGKSGHRA 124
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVNE-------QFCPLCNKKGHTA 301
RC+ C + GH A NC E C C ++GH A DC N + C C K+GH A
Sbjct: 94 RCWNCREPGHVASNCSNEG---ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLA 150
Score = 34.7 bits (76), Expect = 0.058
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 390 CRRCSEAGHMAGDCVNEQFCPLCNKKGHTA 301
C C GH A DC N C C GH A
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIA 86
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDR-SRACRRCSEAGHMAGDC--------VNEQFCPLCNKKGHT 304
CY C GH A +C + + SR C +C +GH+A DC N+ C C K+GH
Sbjct: 232 CYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHF 291
Query: 303 A 301
A
Sbjct: 292 A 292
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = -1
Query: 456 CYRCWKYGHKADNCD-----GEDRSRACRRCSEAGHMAGDC 349
CY+C GH A +CD G AC +C + GH A +C
Sbjct: 255 CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Frame = -1
Query: 456 CYRCWKYGHKADNCD-------GEDRSRA---CRRCSEAGHMAGDCVN 343
CY C + GH + +C GE RSR C C + GH A DC +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTS 149
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Frame = -1
Query: 456 CYRCWKYGHKADNC----------DGEDRSRACRRCSEAGHMAGDCVNE----QFCPLCN 319
CY C GH A +C G S C C GH+A DC + + C C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 318 KKGHTA 301
GH A
Sbjct: 260 GSGHLA 265
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Frame = -1
Query: 456 CYRCWKYGHKADNC------DGEDRSRA------CRRCSEAGHMAGDCVNEQFCPLCNKK 313
CY C GH A +C +G+ R C C + GH A DC +
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 312 GHTAGT 295
G +GT
Sbjct: 226 GGGSGT 231
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRA-CRRCSEAGHMAGDCVNEQFCPLCNKKGHTA 301
CY C + GH + NC + R C C H A C C +C K GH A
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRA 220
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = -1
Query: 483 IYERIELLRCYRCWKYGHKADNCD---------GEDRSRACRRCSEAGHMAGDCVN 343
++ E CYRC + GH A C G + C RC+ +GH A +C N
Sbjct: 318 LFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPN 373
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGE----DRSRACRRCSEAGH 364
CY C K GH+A +C + + C RC + GH
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDC 349
C+ C H A C + C C + GH A DC
Sbjct: 191 CFICGSLEHGAKQCS---KGHDCYICKKTGHRAKDC 223
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
RC+ C GH A +C D C RC E GH+ +C N
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKN 138
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
RC+ C GH A +C D C RC E GH+ +C N
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKN 97
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
RC+ C GH A +C D C RC E GH+ +C N
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKN 97
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
RC+ C GH A +C D C RC E GH+ +C N
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKN 108
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRACRRCSEAGHMAGDCVN 343
RC+ C GH A +C D C RC E GH+ +C N
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKN 138
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSR----ACRRCSEAGHMAGDCVNEQFCPLCNKKGH 307
CY+C K GH A +C + C CSE GH + C N++ N KGH
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKR-TDQVNPKGH 88
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = -1
Query: 396 RACRRCSEAGHMAGDC-VNEQ------FCPLCNKKGHTAGTSGC 286
RAC +C + GH A C V Q C C+++GH ++GC
Sbjct: 34 RACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHR--SNGC 75
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 34.3 bits (75), Expect = 0.077
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 17/69 (24%)
Frame = -1
Query: 456 CYRCWKYGHKADNCD------GEDRSRACRRCSEAGHMAGDC-----------VNEQFCP 328
CY C GH A C G RAC C GH+A DC C
Sbjct: 226 CYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCF 285
Query: 327 LCNKKGHTA 301
+C K+GH A
Sbjct: 286 ICGKEGHFA 294
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Frame = -1
Query: 456 CYRCWKYGHKADNC---------DGEDRSRACRRCSEAGHMAGDC 349
CY C GH A +C G R C C E GH+A DC
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC 176
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRA--------------CRRCSEAGHMAGDC 349
C+ C + GH A +CDG ++ C C + GH A DC
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 145
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 32.7 bits (71), Expect = 0.24
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 459 RCYRCWKYGHKADNCDGEDRSRA 391
RC+ C + GH A NC+G+ + RA
Sbjct: 263 RCFLCGQMGHFASNCEGKPKKRA 285
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRSRA--------------CRRCSEAGHMAGDCVN 343
CY+C K GH + +C G+ ++ C +C +AGH + DC +
Sbjct: 306 CYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTS 357
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Frame = -1
Query: 456 CYRCWKYGHKADNC-----DGEDRSRA----CRRCSEAGHMAGDCVNEQFCP 328
CY+C K GH A +C G +S + C +C + GH + DC + P
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNP 290
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = -1
Query: 477 ERIELLRCYRCWKYGHKADNC-----DGEDRSRACRRCSEAGHMAGDC 349
E E CY C GH +C DG + +C C GH++ +C
Sbjct: 120 ESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNC 167
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = -1
Query: 456 CYRCWKYGHKADNC----DGEDRSRACRRCSEAGHMAGDC 349
C +C + GH NC + + C C + GH C
Sbjct: 101 CLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHC 140
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.95
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 456 CYRCWKYGHKADNCDGEDRS 397
CYRC K GH A +C G++ S
Sbjct: 926 CYRCKKVGHLARDCHGKETS 945
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 408 EDRSRACRRCSEAGHMAGDC 349
+D + C RC + GH+A DC
Sbjct: 920 DDAVKICYRCKKVGHLARDC 939
>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
kinase, putative similar to GB:AAC50043 from
[Arabidopsis thaliana] (Plant Mol. Biol. 37 (4), 587-596
(1998))
Length = 1014
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 505 SSLPPASNLPGILFIQDHRCRLVFHRPSGLSDLISKLSTFFIKFVDXKSSLTSSISN 675
SS PP NL I + +C+++ P + DL KL T + F + SS N
Sbjct: 272 SSFPPLKNLESIKTLILRKCKIIGPIPKYIGDL-KKLKTLDLSFNLLSGEIPSSFEN 327
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 390 CRRCSEAGHMAGDC 349
C +C E GHMA DC
Sbjct: 131 CYKCGEPGHMARDC 144
Score = 25.8 bits (54), Expect(2) = 1.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 393 ACRRCSEAGHMAGDCVN 343
+C C E+GH A DC +
Sbjct: 184 SCYSCGESGHFARDCTS 200
Score = 23.4 bits (48), Expect(2) = 1.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 456 CYRCWKYGHKADNC 415
CY+C + GH A +C
Sbjct: 131 CYKCGEPGHMARDC 144
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Frame = -1
Query: 543 EDARKVACGW*GRVGLNICHI---YERIELLRCYRCWKYGHKADNCD---GEDRSRACRR 382
ED + + C +G ++C I + + + CYRC + GH C + S +C
Sbjct: 48 EDLKNIKCYVCNSLG-HLCCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 381 CSEAGHMAGDCVN 343
C GH C N
Sbjct: 107 CGREGHFEHQCHN 119
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 411 GEDRSRACRRCSEAGHMAGDCVN 343
G + R C C GH+A DC N
Sbjct: 190 GRETRRLCYECKGKGHIARDCPN 212
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 402 RSRACRRCSEAGHMAGDCVNEQFCPLCNK 316
R R C RC+ A + D N+++C C K
Sbjct: 156 RHRVCLRCATASFVVLDGENKRYCQQCGK 184
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 801
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 402 RSRACRRCSEAGHMAGDCVNEQFCPLCNK 316
R R C RC+ A + D N+++C C K
Sbjct: 156 RHRVCLRCATASFVVLDGENKRYCQQCGK 184
>At5g05640.1 68418.m00616 nucleoprotein-related contains weak
similarity to Swiss-Prot:P03515 nucleocapsid protein
(Nucleoprotein) [Punta toro phlebovirus]
Length = 323
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -1
Query: 240 IKKMVFKVLQINIDRGKAAHDLLLATASSMSADLVMLSEPNRKLAKAAGWECDTRGDAAL 61
+ + F+ + I + RG D L T + A + +++A G E +G L
Sbjct: 58 VSRTFFRAVSIGLLRGNIRKDQLERTCDAGKAII-------KRVAAILGIEIRDKGQRKL 110
Query: 60 VLLNKTLTVSEI 25
VL NKT+T S +
Sbjct: 111 VLTNKTVTFSRM 122
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 25.8 bits (54), Expect(2) = 3.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 393 ACRRCSEAGHMAGDCVN 343
+C C E+GH A DC +
Sbjct: 181 SCYSCGESGHFARDCTS 197
Score = 21.4 bits (43), Expect(2) = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1
Query: 456 CYRCWKYGHKADNC 415
C++C + GH A C
Sbjct: 138 CFKCGEPGHMAREC 151
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 435 GHKADNCDGEDRSRACRRCSEAGHMAGDCV 346
G A+N + E R C C + GH DC+
Sbjct: 589 GSLAENAEEEQRDLICFYCGKKGHCLRDCL 618
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Frame = -1
Query: 456 CYRCWKYGHKADNCD----GEDRSRACRRCSEAGHMAGDC----------VNEQF--CPL 325
C C + GH+ C DR CR C GH C ++ ++ C +
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 324 CNKKGHTAGT 295
C ++GH + T
Sbjct: 326 CGERGHNSRT 335
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 207 NIDRGKAAHDLLLATASSMSADLVMLSEPNRKLAKAAGW 91
N+ +GKA+HD L++ S+++D+ +L +++ AG+
Sbjct: 584 NVGQGKASHDALMSWLGSVASDVGILVVGLQEVEMGAGF 622
>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
family / APC10 family contains Pfam PF03256:
Anaphase-promoting complex, subunit 10 (APC10) domain;
similar to anaphase promoting complex subunit APC10
(GI:6463666) [Homo sapiens]
Length = 192
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 282 VSIHWCQLCVLFYYTGDRIAHLRNLRPYGPLPN 380
V+ Q+ +L + R H+R ++ YGP PN
Sbjct: 139 VNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPN 171
>At1g18380.1 68414.m02296 expressed protein
Length = 250
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 396 RACRRCSEAGHMAGDCV-NEQFCPLCNKKGHTA 301
+ACRRC ++G + G + +E F LC + H +
Sbjct: 209 KACRRCIDSGGICGSALDSESFRCLCADRPHNS 241
>At5g64120.1 68418.m08052 peroxidase, putative identical to
peroxidase [Arabidopsis thaliana]
gi|1483222|emb|CAA67551
Length = 328
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 312 GHTAGTSGCSLFREAL 265
GHT GT+GC +FR L
Sbjct: 196 GHTIGTAGCGVFRNRL 211
>At5g39970.1 68418.m04847 expressed protein low similarity to
up-regulated by thyroid hormone in tadpoles; expressed
specifically in the tail and only at metamorphosis;
membrane bound or extracellular protein; C-terminal
basic region [Xenopus laevis] GI:1234787
Length = 690
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 476 SYMWHILSPTLPYHPQATFLASSSS 550
+Y WH TLP+HP ++ S+S+
Sbjct: 484 NYGWHYYEGTLPFHPSSSSNISNST 508
>At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
acyltransferase
Length = 502
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 403 ILAVAVIRFVAIFP---APVTSQQFYSFIYVAYIEPYSSLPPASNLPGILFIQDHR 561
ILAV I A+ P P SQ F I V P PPA+ G+LF+ HR
Sbjct: 249 ILAVIRIFLGAVLPLWATPYVSQIFGGHIIVKGKPPQ---PPAAGKSGVLFVCTHR 301
>At5g64110.1 68418.m08051 peroxidase, putative similar to peroxidase
ATP3a [Arabidopsis thaliana] gi|1546698|emb|CAA67340
Length = 330
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -1
Query: 312 GHTAGTSGCSLFREAL----ETASED*PIKKMVFKVLQINID-RGKAAHDLLLATASSMS 148
GHT GT+GC +FR+ T S D I ++Q G A ++L T S
Sbjct: 194 GHTIGTAGCIVFRDRFFNYDNTGSPDPTIAPSFVPLIQAQCPLNGDPATRVVLDTGSGDQ 253
Query: 147 ADLVMLS 127
D L+
Sbjct: 254 FDTSYLN 260
>At5g25400.1 68418.m03013 phosphate translocator-related low
siimilarity to phosphoenolpyruvate/phosphate
translocator precursor [Mesembryanthemum crystallinum]
GI:9295275, SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea}
Length = 349
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 66 LHLPWCHTPIQQLLPIFYWVQIASLDPRSYCSQLPEVGRARLSLGLYLS 212
+H+ +C T L+ +F +V+ S+ +Y + +G A SL L+LS
Sbjct: 56 IHMSFCSTLAFLLIKVFKFVEPVSMSRDTYLRSVVPIG-ALYSLSLWLS 103
>At3g24620.1 68416.m03092 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315); expression
supported by MPSS
Length = 523
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 144 PRSYCSQLPEVGRARLSLGLYLSVT 218
P SY LP+ GRA L +Y S+T
Sbjct: 282 PESYIDSLPKNGRASLGDSIYKSIT 306
>At2g34780.1 68415.m04270 expressed protein
Length = 1297
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 498 LNICHIYERIELLRCYRCWKY 436
+N+C I +EL+ CY W +
Sbjct: 1140 INLCDILSLVELIACYTAWDW 1160
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = -1
Query: 459 RCYRCWKYGHKAD--NCDGEDRSRACRRCSEAGHMAGDCVNEQFCPLCNKKGHTAGTSGC 286
RC C K K D NC D C RC+ ++ F LC G+ +G C
Sbjct: 433 RCQACNKE-IKDDPLNCTVCDEYSLCMRCATLPRKVKHRCDDHFLSLCQGVGNASGDLWC 491
Query: 285 SL 280
+
Sbjct: 492 DI 493
>At5g13810.1 68418.m01613 glutaredoxin family protein
Length = 274
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 492 ICHIYERIELLRCYRCWKYGHKADNCDGEDRSRACRRCSEAG 367
+CH I + C C G K + EDR + C C+E G
Sbjct: 226 VCHCCGDIRFVPCSNC--SGSKKLFDEDEDRVKRCPECNENG 265
>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 338
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 77 LVSHSHPAAFANFLLGSDSITRSALILLAVARSRSCAAFPRS 202
L+SH HP + L+G+ +T A L + SR PR+
Sbjct: 57 LISHRHPFFHSLTLIGAILLTFMAFTFLFLTSSRDPGIIPRN 98
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 411 GEDRSRACRRCSEAGHMAGDCVNE 340
G+ + R C C E GH++ C N+
Sbjct: 569 GKIKKRNCYECGEKGHLSSACPNK 592
>At3g04440.1 68416.m00470 expressed protein contains Pfam domain,
PF04515: Protein of unknown function, DUF580
Length = 482
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 276 GRVSIHWCQLCVLFYY 323
GRV + W Q CVL YY
Sbjct: 418 GRVGLAWLQACVLAYY 433
>At3g03700.1 68416.m00373 expressed protein contains Pfam domain,
PF04515: Protein of unknown function, DUF580
Length = 482
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 276 GRVSIHWCQLCVLFYY 323
GRV + W Q CVL YY
Sbjct: 418 GRVGLAWLQACVLAYY 433
>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
family protein similar to inositol 1,4,5-trisphosphate
5-phosphatase (GI:4688596) [Arabidopsis thaliana]
Length = 861
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/39 (25%), Positives = 27/39 (69%)
Frame = -1
Query: 207 NIDRGKAAHDLLLATASSMSADLVMLSEPNRKLAKAAGW 91
N+ +G+A+HD L++ S+++D+ +++ +++ AG+
Sbjct: 579 NVGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGF 617
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,375
Number of Sequences: 28952
Number of extensions: 330786
Number of successful extensions: 1068
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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