Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0153
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 62 1e-10
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 33 0.055
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 32 0.072
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 29 0.51
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.89
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.2
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 27 2.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.6
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar... 26 6.3
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 6.3
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 6.3
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 6.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 8.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.3
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 ARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEI 433
A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +M Y I
Sbjct: 98 AAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRI 156
Query: 434 MFGPDICGPGTKKVHVIFSYK 496
MFGPD CG +VH IF +K
Sbjct: 157 MFGPDKCGV-NDRVHFIFKHK 176
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +1
Query: 547 THLYTLIVKPDNTYEVLIDNEKVESG 624
T+LYTLIVKPD T+EV I+ + V G
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQG 226
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 651 LPPKKIKDPEAKKPEDWDDKPTIP 722
LPP +I DPE KP DW D+P IP
Sbjct: 237 LPPVEIYDPEDIKPADWVDEPEIP 260
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 657 PKKIKDPEAKKPEDWDDK 710
P I DPEA+KPEDWDD+
Sbjct: 294 PLYIPDPEAQKPEDWDDE 311
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 657 PKKIKDPEAKKPEDW-DDKP 713
P+ I DP+A KPEDW +D+P
Sbjct: 275 PRMIPDPDAVKPEDWLEDEP 294
Score = 29.5 bits (63), Expect = 0.51
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 645 DFLPPKKIKDPEAKKPEDWDD 707
D++ +I DP A KP+DWD+
Sbjct: 252 DWVDEPEIPDPNAVKPDDWDE 272
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 32.7 bits (71), Expect = 0.055
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = -1
Query: 271 SIEPRISEVF---KPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNT 104
S+ P +E + + S+S SL P VN + S + ++ L S + S+ NF+S ++
Sbjct: 467 SVTPTSAENYTSSEAFSTSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASS 526
Query: 103 SQFIEDNASKLTTTSTT 53
S + + S L+T STT
Sbjct: 527 SLSLTNAKSSLSTPSTT 543
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.072
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +2
Query: 311 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 490
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 491 YKGK 502
Y GK
Sbjct: 162 YDGK 165
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 289 FELTGESIEPRIS---EVFKPLSSSGSLKNFPAVNLNFPNSFP 170
F+LTGES S E F+P + SL N P +N ++ ++ P
Sbjct: 674 FKLTGESSNGSNSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 651 LPPKKIKDPEAKKPEDWDDKPTIP 722
LP + K P AKKPED++ P P
Sbjct: 168 LPSPEYKAPPAKKPEDYEASPGEP 191
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 196 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 65
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 583 TYEVLIDNEKVESGRPRGRLGTSFRLRKSRTLKPR 687
TY +LID +++ GR GRLG K + KP+
Sbjct: 642 TYILLIDT-RIKEGRYAGRLGFERNFAKDKKPKPK 675
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.6
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = -1
Query: 379 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRISEVFKPLSSSGSLKNFPA 200
DLE ++ F D ++D I +IEP S V +++S S ++
Sbjct: 15 DLEGRHDSIRKSFEAD-DIDVTDENTIFSTSRKEQSTIEPMDSFVENNIANSSSQQSVSE 73
Query: 199 VNLNFPNSFP--GCSLYTQLLSHESSGNFSSKNTSQFIEDNAS 77
+++ P+S P G + L+ S N N I D ++
Sbjct: 74 IDIQLPSSEPKEGVKEESNLIESNSLDNVQEINPQNTIGDKSA 116
>SPAC1610.01 ||SPAC17A5.17|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 286 ELTGESIEPRISEVFKPLSSSGSLKNFPAV--NLNFPNSFPGCSLY 155
+L GE+I P + + K SSG+L P+ F + F +LY
Sbjct: 96 QLEGEAIRPLLDHILKFERSSGTLHEAPSTEDENEFTDDFLELTLY 141
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 114 EEKFPDDSWESNWVYS 161
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 117 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDD 233
+ F +D + +W EH K ++ + + FS+ +D+
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGDDE 87
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 648 FLPPKKIKDPEAKKPEDWDD-KPTIP 722
F+PP +I PE K +WD+ P P
Sbjct: 100 FIPPARILFPEEKLSMEWDNIMPNAP 125
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -2
Query: 159 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 67
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.3
Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 5/129 (3%)
Frame = -1
Query: 424 WSLSVHVLLLQFAVKDLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRISEV 245
+S V L + E+S+ N GF I + S +I
Sbjct: 359 YSTGVETLYETETITSSEISSIIYNFSTPISGSSFPDGFKPINPTSFPSLTSSTKKIPST 418
Query: 244 FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-----SSGNFSSKNTSQFIEDNA 80
P SS P+V+ N +SF S +T H SS +S N S +A
Sbjct: 419 TLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSA 478
Query: 79 SKLTTTSTT 53
S L T ++
Sbjct: 479 SSLPITPSS 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,037
Number of Sequences: 5004
Number of extensions: 70489
Number of successful extensions: 229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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