Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0153
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   130   1e-30
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   130   1e-30
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    71   8e-13
Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    31   0.63 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    31   0.63 
U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical p...    28   7.8  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  130 bits (313), Expect = 1e-30
 Identities = 68/143 (47%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
 Frame = +2

Query: 254 NARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 430
           +A+FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY 
Sbjct: 66  DAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYN 125

Query: 431 IMFGPDICGPGTKKVHVIFSYKGKNH-XXXXXXXXXXXXTHICTL*L*NLTTPMKSSLTM 607
           +MFGPDICGP T++VHVI +YKG+N              TH+ TL L N     +  +  
Sbjct: 126 VMFGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDG 183

Query: 608 RKLNLGDLEADWGLPSA*ENQGP 676
                G LE DW L  A + + P
Sbjct: 184 ESAQTGSLEEDWDLLPAKKIKDP 206



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = +3

Query: 93  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSE 254
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHK-DDFGAFKLSAGKFFDVESRDQGIQTSQ 65



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 645 DFLPPKKIKDPEAKKPEDWDDKPTI 719
           D LP KKIKDP+AKKPEDWD++  I
Sbjct: 196 DLLPAKKIKDPDAKKPEDWDEREYI 220



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 645 DFLPPKKIKDPEAKKPEDWDDK 710
           D+  P+ I DP+AKKPEDWDD+
Sbjct: 230 DWEKPEHIPDPDAKKPEDWDDE 251


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  130 bits (313), Expect = 1e-30
 Identities = 68/143 (47%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
 Frame = +2

Query: 254 NARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 430
           +A+FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY 
Sbjct: 66  DAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYN 125

Query: 431 IMFGPDICGPGTKKVHVIFSYKGKNH-XXXXXXXXXXXXTHICTL*L*NLTTPMKSSLTM 607
           +MFGPDICGP T++VHVI +YKG+N              TH+ TL L N     +  +  
Sbjct: 126 VMFGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDG 183

Query: 608 RKLNLGDLEADWGLPSA*ENQGP 676
                G LE DW L  A + + P
Sbjct: 184 ESAQTGSLEEDWDLLPAKKIKDP 206



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = +3

Query: 93  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSE 254
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHK-DDFGAFKLSAGKFFDVESRDQGIQTSQ 65



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 645 DFLPPKKIKDPEAKKPEDWDDKPTI 719
           D LP KKIKDP+AKKPEDWD++  I
Sbjct: 196 DLLPAKKIKDPDAKKPEDWDEREYI 220



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 645 DFLPPKKIKDPEAKKPEDWDDK 710
           D+  P+ I DP+AKKPEDWDD+
Sbjct: 230 DWEKPEHIPDPDAKKPEDWDDE 251


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
 Frame = +2

Query: 257 ARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPY 427
           AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T Y
Sbjct: 118 ARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAY 177

Query: 428 EIMFGPDICGPGTKKVHVIFSYK 496
            IMFGPD CG  T KVH+IF YK
Sbjct: 178 TIMFGPDKCG-ATGKVHLIFRYK 199



 Score = 34.3 bits (75), Expect = 0.089
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 535 DDVYTHLYTLIVKPDNTYEVLIDNEKVESG 624
           DD  THL+TL+VKP   Y V +D + +  G
Sbjct: 223 DDHNTHLFTLVVKPTGEYSVSVDGKSLYYG 252



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 666 IKDPEAKKPEDWDD 707
           I DPEAKKP+DWD+
Sbjct: 323 IADPEAKKPQDWDE 336



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 654 PPKKIKDPEAKKPEDWDDKPTI 719
           PPK+I D    KP DWD++  I
Sbjct: 264 PPKQIFDETDLKPVDWDERENI 285


>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -1

Query: 373 EVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRISEVFKPLSSSGSLKNFPAVN 194
           +V+   +  LF+ +S+LD   +T ++ RF  + +S   RI EVF   SSS  L   P+ +
Sbjct: 166 KVACCLIRALFLNNSDLD--AYTSVSTRFFTSSKSSYKRILEVFGSTSSSLVLTTTPSTS 223


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502   EPFIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 621
             E +I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12857 EKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 502   EPFIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 621
             E +I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12857 EKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical
           protein C07G1.7 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 379 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 257
           D E     + +L   D ++DY+ F  + E+F   G+S+  R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,087,416
Number of Sequences: 27780
Number of extensions: 412857
Number of successful extensions: 1310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)