Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0152
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    29   0.72 
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   2.9  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   3.8  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    27   3.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   3.8  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   5.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.8  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   8.8  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 666 TYREDLLNSPKNIPNLQNYCLSVTALS 586
           TY+  +L++  N PN  N CLS + ++
Sbjct: 503 TYKNTILSNENNTPNYSNVCLSTSLIN 529


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 429 ILKSYPKVTVEVKWELQSEHGRLSLRSINAKTGLNSTS 542
           +L +  ++  +  W   +EHG++++  IN  + LNS +
Sbjct: 362 LLPAIVRLLQQDHWRFDAEHGQITVYGINRHSKLNSNA 399


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 147 FKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIAC 260
           F +  S L+ ++N   S  + S   C+L+   D  I C
Sbjct: 171 FVEMSSALSNIYNTDASDGDSSDDSCLLEDEEDFCIIC 208


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 399 PWADYKATLPILKSYPKVTVEVKWELQSEHGRLSLRSI 512
           PW ++      +  + +VT+++KW   + + RL  R I
Sbjct: 205 PWLEFPLLYSSIGKFVRVTIDIKWLNAAINPRLCRREI 242


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 272 LHNIDRINTE--VHGVIMNIPIPFPLPE 349
           LH + ++N +  VHGV++ +P+P  L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 521 FSVYRTQTKSPMFTLELPLYFHCHLRIRLQDRQ 423
           FSV + Q K  MF   LP Y+H H+ I   D +
Sbjct: 223 FSVDKNQLK--MFVHYLPSYYHLHVHILHVDHE 253


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 187 TLWTVASLDPQSLKNLASALAKSTAAVMKNNIFVNKMRFG 68
           T W V   DP  LK  A+ + +   +++ +NI  + +  G
Sbjct: 300 TRWVVDKADPNFLKPKAAMILEKILSILSSNIIQSDLLRG 339


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 283 RSHKYRSSRGHHEHPDTVP 339
           RS  YRS R H+++ DT P
Sbjct: 336 RSDSYRSKREHYDNRDTGP 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,219
Number of Sequences: 5004
Number of extensions: 63438
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)