Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0152
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31) 42 5e-04
SB_15799| Best HMM Match : PH (HMM E-Value=0.76) 32 0.58
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 32 0.58
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 29 5.4
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 9.4
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 28 9.4
>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 257 LQFTPLHNIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEG 397
L F P ++ R H +I +P+P P+P SDAC+ GL+CP+ G
Sbjct: 60 LTFIPHEDLKRAKLSAHAIIDKLPLPLPIP-SDACQGYGLSCPVDSG 105
>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
Length = 167
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 263 FTPLHNIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEG 397
F P + EV G+I + +PFPL + C+++G+ CP+ G
Sbjct: 62 FVPNELVSSATIEVFGIIGGVQVPFPLKNPNVCENHGVKCPINAG 106
>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
Length = 836
Score = 31.9 bits (69), Expect = 0.58
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Frame = +3
Query: 378 PAPSRREPWADYKATLPILKSYPKVTVEVKWELQSEHGRLSLRSINAKTGLNSTSRLY*I 557
P +++ W+ L +L KVT E+K + ++G+ L+ + ++T S LY
Sbjct: 706 PTITKKRIWSKKYPLLVMLDKPGKVTEEIKEVITEDNGKSILQKMRSQTSFEDISILYLF 765
Query: 558 --RGR----F*LDFSDLMPSQRDSNFVNLE-CFWVSLVSPHGR*KLFWFISDT 695
GR + FS LM S ++ +L+ S PH KL I DT
Sbjct: 766 ARTGREKEEWYQYFSKLMVSNKEETISDLDYLLRPSCSYPHYMAKLLPVIEDT 818
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 31.9 bits (69), Expect = 0.58
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Frame = +3
Query: 378 PAPSRREPWADYKATLPILKSYPKVTVEVKWELQSEHGRLSLRSINAKTGLNSTSRLY*I 557
P +++ W+ L +L KVT E+K + ++G+ L+ + ++T S LY
Sbjct: 580 PTITKKRIWSKKYPLLVMLDKPGKVTEEIKEVITEDNGKSILQKMRSQTSFEDISILYLF 639
Query: 558 --RGR----F*LDFSDLMPSQRDSNFVNLE-CFWVSLVSPHGR*KLFWFISDT 695
GR + FS LM S ++ +L+ S PH KL I DT
Sbjct: 640 ARTGREKEEWYQYFSKLMVSNKEETISDLDYLLRPSCSYPHYMAKLLPVIEDT 692
>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2011
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 189 TVSGCEESSSHCILKRNTDATIACSLHHCTTSIA*IQKF 305
T+SGC+ SS H + CS+ H TSIA I F
Sbjct: 1023 TMSGCDGSSEHADPHVTQSVSRCCSVPHWCTSIAWIGCF 1061
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 268 TTAQHRSHKYRSSRGHHEHPDTV 336
T+ QH H +SR HHEH T+
Sbjct: 157 TSLQHHEHITTTSRTHHEHITTI 179
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 268 TTAQHRSHKYRSSRGHHEHPDTV 336
T+ QH H +SR HHEH T+
Sbjct: 90 TSLQHHEHITTTSRTHHEHITTI 112
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 205 KSRPVIVY*RETQTPRSPAVYTTAQHRSHKYRSSRGHHEHPDTVPP 342
K+R V V R ++ R P+ A HR + R H + P PP
Sbjct: 778 KARKVEVEKRLSREERDPSRSPWASHREERKRRHTPHEDSPPPPPP 823
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 DCGSKLATVHNVTVSGCEESSSHCILKRNT-DATIACSLHHCTTSIA*IQKFTGSS*TSR 329
D LA +H VT G H I K NT AT+ S + T + + ++ GS +R
Sbjct: 365 DTSIVLAWLHGVTQMGGTVGQDHAIRKCNTRSATLPRSFRNRTHATSRLRMSAGSDADTR 424
Query: 330 YRSPCRSL 353
RS+
Sbjct: 425 KNLRARSM 432
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,621,120
Number of Sequences: 59808
Number of extensions: 501653
Number of successful extensions: 1254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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