Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0152
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family...    30   1.9  
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    29   4.4  
At1g22800.1 68414.m02848 expressed protein similar to Biotin syn...    28   5.8  
At3g45210.1 68416.m04879 expressed protein contains Pfam profile...    28   7.7  
At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ...    28   7.7  

>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 238 TQTPRSPAVYTTAQHRSHKYRSSRGHHEHPDTVPP 342
           T    + A++    HR  K+R  R HH+HP   PP
Sbjct: 57  TAIESNKAIHEKHHHRRKKWRQRR-HHKHPPPPPP 90


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 375 SPLSLHASDSGRGNGIGMFMMTP*TSVFMRSMLCSGVNCRRSWRLCFSSVYNDWTT 208
           +PLS HAS SG G+G G   +    +  +R  L       R      +S+   W T
Sbjct: 54  TPLSSHASRSGNGSGSGQLTVVDLLAAVLRKSLVMSCAMERGEDDVVASMDIGWPT 109


>At1g22800.1 68414.m02848 expressed protein similar to Biotin
           synthesis protein bioC. {Serratia marcescens}
           (SP:P36571); ESTs gb|Z34075, gb|Z34835 and gb|AA404888
           come from this gene
          Length = 355

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 75  LILLTKMLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATI 254
           L+   K+L   TA    A  ++ F  + G+  AT   + ++G  E SSH   KR   AT+
Sbjct: 283 LLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATV 342

Query: 255 A 257
           +
Sbjct: 343 S 343


>At3g45210.1 68416.m04879 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 148

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 205 SHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNN 95
           S P TVT  TVAS  P +++N +  L K     ++N+
Sbjct: 60  SSPATVTTTTVASSLPMNVQNWSKILGKENRKSIEND 96


>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
           CL21 (RPL21) identical to 50S ribosomal protein L21,
           chloroplast precursor (CL21) [Arabidopsis thaliana]
           SWISS-PROT:P51412
          Length = 220

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 183 NVTVSGCEESSSHCILKRNTDATIACSLHHCTTSIA 290
           + T+S C   S+HC +     +TI CSL   + ++A
Sbjct: 5   SATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLA 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,440
Number of Sequences: 28952
Number of extensions: 347785
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)