Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0151
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    29   0.73 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   3.9  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   5.1  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    26   5.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   5.1  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    26   6.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   9.0  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.0  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 300 GVFGAEGCEVTETTLTTSNSGSIMRTSLD 214
           G+ G EG E T+T++TT+++ S + TS D
Sbjct: 623 GMSGTEGFENTQTSITTNDNQSSILTSSD 651


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +2

Query: 266 SVTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWP---RRALGCPSSEALSTS*RNMTST 436
           S T+  S P T  S++     V   +  ST T  P     + G  SS   STS    TST
Sbjct: 284 SCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTST 343

Query: 437 VWIWTGSIPVPLTGVAPSPIKTSSVFRP 520
               TG+   P+T   P P  TSS   P
Sbjct: 344 SIPPTGNSTTPVTPTVP-PTSTSSTSTP 370



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 266 SVTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWP---RRALGCPSSEALSTS*RNMTST 436
           S T+  S P T  S++     V   +  ST T  P     + G  SS  LSTS    TST
Sbjct: 338 SCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTST 397

Query: 437 VWIWTGSIPVPLTGVAPSPIKTSS 508
               TG+   P+T   P P  +S+
Sbjct: 398 SIPPTGNSTTPVTPTVP-PTSSST 420


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 605 LHQPE-ISKRYGSSQLPSSTGSDERPL*LLDEIQNL 501
           L  PE I +     QLPS+   DE+ L L DEI NL
Sbjct: 13  LFSPESIEQSLKRCQLPSTLLYDEKGLRLFDEITNL 48


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 331 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 450
           W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 292 KHPDVKFMVAVGGWAEGGSKYSHMVAQKSTRMS 390
           +HP  KF+V VGG+     ++ H    K T  S
Sbjct: 136 QHPPFKFVVFVGGFRAEKPEFDHFYNPKLTTPS 168


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 QKSTRMSFIRSVVDFLKKYDFDGLDLD 450
           +   R  F   V D +K+Y FDG+ LD
Sbjct: 190 KNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 1   GVTVENASDICDVGCPGELRR--ISSVGQQSAHRLLLQ*LGGVPTRRWTLWHRRHPRGFV 174
           G  +EN       G PG L+   +  +  +  H+ LL+   G    R  LW RR  R ++
Sbjct: 67  GRKLENHKYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYI 126

Query: 175 Y 177
           Y
Sbjct: 127 Y 127


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 22/81 (27%), Positives = 40/81 (49%)
 Frame = +2

Query: 266 SVTSHPSAPNTPMSSSWSRLAVGLKAAPSTHTWWPRRALGCPSSEALSTS*RNMTSTVWI 445
           SV S  S+P++  SS+ +  ++   + PST       +    +S +LS+S  + T++   
Sbjct: 214 SVVSSSSSPSSSSSSTLTSSSLSTSSIPST------SSSSSSTSSSLSSSSSSSTASSSS 267

Query: 446 WTGSIPVPLTGVAPSPIKTSS 508
            + SI    +  + SP  TSS
Sbjct: 268 SSSSIISSSSSSSSSPTSTSS 288


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 458 IPVPLTGVAPSPIKTSSVFRP 520
           +P+PLT +  +P   S VF+P
Sbjct: 314 LPIPLTSIPSTPSIRSHVFKP 334


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 444 IQTVEVIFLQEVDNASD 394
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,110
Number of Sequences: 5004
Number of extensions: 74961
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)