Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0150
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 502 PSGHVPTYPAQEPVSQXLSAPSTXLSQSCD 413
           P   VP+YP +E +++  +   T +   CD
Sbjct: 313 PIKFVPSYPFEEDINEGSNYMQTRVPAWCD 342


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 449 KXLAHWFLSWICRHVAGWXXGXK*RLCXXG 538
           K L + +  W   HV GW  G    LC  G
Sbjct: 518 KYLTYEYPWW--SHVLGWLCGLSSMLCIPG 545


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 449 KXLAHWFLSWICRHVAGWXXGXK*RLCXXG 538
           K L + +  W   HV GW  G    LC  G
Sbjct: 571 KYLTYEYPWW--SHVLGWLCGLSSMLCIPG 598


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 333 TRASFHCXSMPLVVECXWFLXWT 265
           TRA      M +++   +F+ WT
Sbjct: 252 TRAKIRTLKMTVIIIAVFFICWT 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,050
Number of Sequences: 438
Number of extensions: 1732
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)