Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0149
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   1.5  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   3.5  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   3.5  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.2  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   8.1  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.1  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 191 GIVIYFEERLTSNFNKNYYVHKNT 120
           GIV  ++E  TS+F+K++Y H ++
Sbjct: 35  GIVESYQESSTSDFDKSHYTHNSS 58


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 497 IFQKVKL-PDDDTPAVRAGRFTIGPAPGN 580
           IF   K+ P  D P  R GRFT+   P N
Sbjct: 282 IFDLTKVWPHKDVPMQRVGRFTLNQNPTN 310


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -3

Query: 443 HPALIQEHLVRTVARLPLLGERTHLRRHSVSNSLHDK 333
           HP+ +  H ++ +AR P + +   +   S+ N  ++K
Sbjct: 275 HPSSLHMHRIKKIARYPYMYDDARMMEQSLLNLAYNK 311


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 467 TLPHRHDHHPALIQEHLVRTVARLPLLGERTHLRRHSVSNSLHDKMAHADNSRASSTHS 291
           T+P+       + Q    RT+A   LL ER  LRR ++   L   +    NS     HS
Sbjct: 376 TIPYSVTEAANVFQNKTKRTLAVEQLLSERELLRRFTLQQRLVADLHEFYNSVKGPAHS 434


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 362 HSVSNSLHDKMAHADNSRASS 300
           H  S+S+H   AH+ +SR+SS
Sbjct: 621 HLSSSSVHSSSAHSSSSRSSS 641


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 117 IGHFLTSQRFLNFKLNNTS 61
           I H LTS R  NF LN+TS
Sbjct: 614 IKHVLTSTRTQNFVLNDTS 632


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 402 GDGADEMLLDKSRVVVVPVGKSGDEHALVTAKS 500
           GD  D   LD++  + +P+  + D H +   +S
Sbjct: 312 GDKIDTFSLDEAANIQIPIQSTSDNHTVTVDRS 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,914
Number of Sequences: 5004
Number of extensions: 32111
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)