Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0149
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0065 - 28129527-28130435 30 1.2
04_04_0771 - 27968535-27968538,27968721-27968929 30 1.6
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058... 29 2.7
02_03_0226 - 16591383-16592030,16592132-16592211,16592246-165929... 29 3.6
11_02_0037 - 7613632-7613727,7614452-7615507 26 4.4
06_03_0046 - 15852653-15854560 28 4.8
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 28 6.3
06_03_0828 + 25137782-25138312,25141349-25141588 28 6.3
11_02_0102 + 8314115-8314540 27 8.3
06_01_0029 - 288676-289287,289441-289733,289842-290031 27 8.3
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 8.3
>11_08_0065 - 28129527-28130435
Length = 302
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 381 LAEEGKAGDGADEMLLDKSR--VVVVPVGKSGDEHALVTAKSSK 506
LA AG GAD K++ V++ +G +GD+++L TAKS++
Sbjct: 78 LAGHPLAGVGADVKHCQKAKNVTVLLSIGGAGDQYSLPTAKSAQ 121
>04_04_0771 - 27968535-27968538,27968721-27968929
Length = 70
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 448 SCRWGRVGTSTLW*RLNLPKSKAAG*RHAGGPSG 549
SC WGR+G + LW RL RH GG G
Sbjct: 4 SC-WGRLGLAALWHRLRQLSVARRRRRHGGGGGG 36
>06_03_0712 +
23803597-23803945,23804118-23805479,23805743-23805811,
23806050-23806330,23806817-23807076,23807521-23807689,
23807796-23808068,23808251-23808499
Length = 1003
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 236 VICRIKVLIGKKTFHY--RALNAWKKRGN 316
V+C + +L G+ F+ R LNAWK++G+
Sbjct: 544 VVCAVLILQGQNIFNIIKRFLNAWKQKGS 572
>02_03_0226 -
16591383-16592030,16592132-16592211,16592246-16592971,
16593060-16593192,16596839-16597518,16597604-16597666,
16597740-16597916,16598414-16598542,16598638-16598796,
16599057-16599224,16599418-16599519,16599812-16599857
Length = 1036
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 470 PTLPHRHDHHPALIQEHLVRTVA 402
PTL HR H P+L Q+ ++RTVA
Sbjct: 441 PTLSHRFQHSPSLDQD-VIRTVA 462
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 25.8 bits (54), Expect(2) = 4.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 551 DPLGPPACRHPAALLFGRFSRHQSVLVPTLPHRH 450
D L +C AA L RH +L P LPH H
Sbjct: 196 DDLDADSC---AAALRAAAGRHHHLLGPALPHHH 226
Score = 21.0 bits (42), Expect(2) = 4.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -3
Query: 470 PTLPHRHDHHPALI 429
P PH H HH +I
Sbjct: 256 PPPPHGHHHHHQII 269
>06_03_0046 - 15852653-15854560
Length = 635
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 482 SVLVPTLP-HRHDHHPALIQEHL 417
+++ P +P H DHH ALI +HL
Sbjct: 368 AIVEPAIPEHEWDHHRALISDHL 390
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 336 VVKRI*HGMASQMRSLAEEGKAGDGADEMLLDKSRVVVVPVG 461
V++R+ MAS MR+ G A DGA E+ + S V +P G
Sbjct: 64 VLRRVADAMASGMRA----GLADDGAGELKMIPSHVYSLPTG 101
>06_03_0828 + 25137782-25138312,25141349-25141588
Length = 256
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 354 HGMASQMRSLAEEGKAGDGADEMLLDKSRVVVVPVGKSGDE 476
HG+ R + G GDGAD +LL VVV G+ GD+
Sbjct: 186 HGINRCCRLVGGGGVGGDGADRLLL-----VVVGGGEEGDD 221
>11_02_0102 + 8314115-8314540
Length = 141
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 296 AWKKRGNCPHAPSCREANLTRNGVS 370
AW RG P P CR L G S
Sbjct: 12 AWWSRGRHPRGPGCRRPRLVELGAS 36
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -3
Query: 461 PHRHDHHPALIQEHLVRTVARLPLLGERTHLRRHSVSNSLHDKMAHADNSRASSTHSM 288
PH+H L ++HL T L + L+ + + L + M H S SS HS+
Sbjct: 215 PHQHHAGITLQEQHLHTTYKHRDLTTKIQQLQVPAAGHHLLNTMPHDLESSTSSFHSL 272
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 416 VRTVARLPLLGERTHLRRHSVSNSLHDKMAHADNSR 309
+R++ +L LL + SN +H+KMAHA+ ++
Sbjct: 838 LRSLKKLWLLHLHKDFNTYWESNGMHEKMAHANTAK 873
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,439
Number of Sequences: 37544
Number of extensions: 219750
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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