Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0149
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 30 1.6
SB_46268| Best HMM Match : zf-C3HC4 (HMM E-Value=0.4) 29 2.1
SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 28 4.9
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_6860| Best HMM Match : zf-C3HC4 (HMM E-Value=0.14) 27 8.5
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = -3
Query: 461 PHRHDHHPALIQEHLVRTVARLPLL--GERTH---LRRHSVSNSLHDKMAHADNSRASST 297
PH H HH A+ H++ TV P +R H HS ++H + + SS+
Sbjct: 358 PHHHSHHSAITNIHIIITVPSPPSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSS 417
Query: 296 HSMH 285
H
Sbjct: 418 QRHH 421
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = -3
Query: 461 PHRHDHHPALIQEHLVRTVARLP--LLGERTH---LRRHSVSNSLHDKMAHADNSRASST 297
PH H HH A+I H++ P L +R H HS ++H + SS+
Sbjct: 588 PHHHSHHSAIITIHIIIRAPSSPSISLSQRHHHHPHHHHSAITTIHIIITAPSPPSTSSS 647
Query: 296 HSMH 285
H
Sbjct: 648 QRHH 651
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/34 (29%), Positives = 13/34 (38%)
Frame = -3
Query: 461 PHRHDHHPALIQEHLVRTVARLPLLGERTHLRRH 360
PH H HH A+ H++ T P H
Sbjct: 196 PHHHSHHSAITNIHIIITAPSPPSTSSSQRYHHH 229
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -3
Query: 458 HRHDHHPALIQEHLVRTVARLPLL--GERTH---LRRHSVSNSLHDKMAHADNSRASSTH 294
H H HH A+I H++ TV P +R H HS ++H + + SS+
Sbjct: 293 HPHHHHSAIITIHIIITVPSPPSTSSSQRHHHHPHHHHSAITTIHIIITAPSSPSISSSQ 352
Query: 293 SMH 285
H
Sbjct: 353 RNH 355
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = -3
Query: 461 PHRHDHHPALIQEHLVRTVARLPLL--GERTH---LRRHSVSNSLHDKMAHADNSRASST 297
PH H HH A+ H++ T P +R H HS ++H + + SS+
Sbjct: 424 PHHHSHHSAITNIHIIITAPSPPSTSSSQRHHHHPHHHHSAIITIHIIITAPSSPSTSSS 483
Query: 296 HSMH 285
H
Sbjct: 484 QRHH 487
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 461 PHRHDHHPALIQEHLVRTVARLP--LLGERTHLRRHSVSN 348
PH H H A+I H++ T P L +R H H S+
Sbjct: 554 PHHHSHKSAIITIHIIITAPSPPSISLSQRHHHHPHHHSH 593
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -3
Query: 548 PLGPPACRHPAALLFGRFSRHQSVLVPTLPHRHDHHPALIQEHLVRTV 405
PL PP RHP A R + H L P + P L L++ +
Sbjct: 662 PLPPPTVRHPQATPLPRLATHPPPLSTPQPRQSTALPLLTTRQLLQVI 709
>SB_46268| Best HMM Match : zf-C3HC4 (HMM E-Value=0.4)
Length = 75
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +2
Query: 266 KKTFHYRALNAWKK----RGNCPHAPSCR 340
K+T H+R LN W K RG P P CR
Sbjct: 21 KQTMHHRCLNDWYKVQEYRGLLPTCPHCR 49
>SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 554 IDPLGPPACRHPAALLFGRFSRHQSVLVPTLP 459
I P+ R P + +F F RHQS +PTLP
Sbjct: 34 IHPVNRATPRPPRSYVFTFFYRHQSSSLPTLP 65
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 461 PHRHDHHP--ALIQEHLVRTVARLPLLGERTHLRRHSVSNSLHDKMAHADNSRASSTHSM 288
PH H H Q+H + +L + HL RHS + +LH H +R + H+
Sbjct: 102 PHVHSTHTLNTYTQQH-AHSTRKLHTYTQHAHLTRHSTTRALH---THT-QTRTLNMHTQ 156
Query: 287 H 285
H
Sbjct: 157 H 157
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 375 RSLAEEGKAGDGADEMLLDKSRVVVVPVGKSGDEHALVTAKSSKK 509
+++ E GK GD ++ K + ++ +GK GD +T KK
Sbjct: 343 KTMIEMGKCGDVGCQITQMKRKKTMIEMGKCGDVGCQITQMKRKK 387
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 375 RSLAEEGKAGDGADEMLLDKSRVVVVPVGKSGDEHALVTAKSSKK 509
+++ E GK GD ++ K + ++ +GK GD +T KK
Sbjct: 387 KNMIEMGKCGDVGCQITQMKHKKTMIEMGKCGDVGCQITQMKRKK 431
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 375 RSLAEEGKAGDGADEMLLDKSRVVVVPVGKSGDEHALVTAKSSKK 509
+++ E GK GD ++ K + ++ +GK GD +T KK
Sbjct: 409 KTMIEMGKCGDVGCQITQMKRKKTMIEMGKCGDVGCQITQMKRKK 453
>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/91 (23%), Positives = 38/91 (41%)
Frame = -3
Query: 554 IDPLGPPACRHPAALLFGRFSRHQSVLVPTLPHRHDHHPALIQEHLVRTVARLPLLGERT 375
I+ LGPP HP H V++ P RH I++ ++ + L T
Sbjct: 634 INLLGPPVRHHPGYTCTSLSEVHLYVIIQGTPVRHQPGNTCIRK-VINRGSPLRHHPGYT 692
Query: 374 HLRRHSVSNSLHDKMAHADNSRASSTHSMHD 282
++R+ ++ H + H N +S ++D
Sbjct: 693 YIRKVIITRVTHVR-HHPGNKATTSLREVYD 722
>SB_6860| Best HMM Match : zf-C3HC4 (HMM E-Value=0.14)
Length = 129
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +2
Query: 266 KKTFHYRALNAWKK----RGNCPHAPSCRE 343
K+ H+R LN W K RG P P CR+
Sbjct: 21 KQPMHHRCLNDWYKVQEYRGLLPTCPHCRK 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,502,029
Number of Sequences: 59808
Number of extensions: 252282
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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