Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0149
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    30   1.4  
Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -3

Query: 554 IDP-LGPPACRHPAALLFGRFSRHQSVLVPTLPHRHDH-HPALIQEHLVRTVARLPLLGE 381
           ++P  G  +CR  AA     F   +SV+  T   R+ + HP   +E  ++      +  E
Sbjct: 14  VEPHFGGVSCRACAAFFRRYFHSKKSVISCTCQIRYQNSHPC--RECRIQKCFEAGMNPE 71

Query: 380 RTHLRRHSVSNSLHDKMAHADNSRASSTHS 291
           +  ++R      L  ++AHA  S ASS+ S
Sbjct: 72  KVQVKREKHPKKLKMELAHASLSSASSSQS 101


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -3

Query: 554 IDP-LGPPACRHPAALLFGRFSRHQSVLVPTLPHRHDH-HPALIQEHLVRTVARLPLLGE 381
           ++P  G  +CR  AA     F   +SV+  T   R+ + HP   +E  ++      +  E
Sbjct: 16  VEPHFGGVSCRACAAFFRRYFHSKKSVISCTCQIRYQNSHPC--RECRIQKCFEAGMNPE 73

Query: 380 RTHLRRHSVSNSLHDKMAHADNSRASSTHS 291
           +  ++R      L  ++AHA  S ASS+ S
Sbjct: 74  KVQVKREKHPKKLKMELAHASLSSASSSQS 103


>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 374 HLRRHSVSNSLHDKMAHADNSRASSTHSMHD 282
           ++R+HS  + +  K+ H DN   + +H M D
Sbjct: 197 YMRKHSAGHGIEIKLDHVDNPFGNPSHDMMD 227


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 404 ARLPLLGERTHLRRHSVSNSLHDKMAHADNSRASSTHSMHDSG 276
           A  PLL +    R HS+++       H D+   SST S +  G
Sbjct: 338 AHRPLLQDVIFTRSHSITSDYDSNKEHFDSGSWSSTQSRYKDG 380


>Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical
           protein K06B4.6 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 5   LTCF*CNKHKIFKQIKYLFDVLFNLKFKKRCDVR-K*PMKCFCVRNNFC*NLTSIALQNR 181
           ++CF C   K+F +     ++LFN K+ K C +  K   KC   R   C N+   A    
Sbjct: 33  MSCFAC---KMFFRRTVFKNMLFNCKYFKNCTIHYKTHPKCRACRFQKCLNIGMKAASKN 89

Query: 182 SRFRS 196
            R  S
Sbjct: 90  DRIVS 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,455
Number of Sequences: 27780
Number of extensions: 187320
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)