Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0149
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 545 LGPPACRHPAALLFGRFSRHQSVLVPTLPHRHDHHPALIQEH 420
           LG  AC  P     G +      L P+  H H HHP+    H
Sbjct: 294 LGRSACHSP-----GVYPSTAGFLPPSY-HPHQHHPSQYHPH 329



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = -3

Query: 470 PTL--PHRHDHHPALIQEHL 417
           PT+  PH H HH     +HL
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 421 CSWIRAGWWSCRWGRVGT 474
           C W R G+   RW   GT
Sbjct: 155 CKWSRKGFLRTRWSISGT 172


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 392 LLGERTHLRRHSVSNSLHDKMAHADNS 312
           LL ERT  +R+S S     K    +NS
Sbjct: 262 LLEERTSRKRYSCSREREQKSYKNENS 288


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 381 LAEEGKAGDGADEMLLDKSRVVVVPVGKSGDE 476
           + +EG++ +G     L K  +V  P  + GD+
Sbjct: 663 IKQEGQSPEGGKLTRLIKRELVDAPADQEGDD 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,974
Number of Sequences: 438
Number of extensions: 2472
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)