Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0149
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11430.1 68418.m01335 transcription elongation factor-related...    28   4.0  
At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR...    28   4.0  
At5g45410.1 68418.m05580 expressed protein similar to unknown pr...    27   9.2  
At1g77320.1 68414.m09005 BRCT domain-containing protein contains...    27   9.2  

>At5g11430.1 68418.m01335 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 871

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 380 RTHLRRHSVSNSLHDKMAHADNSRASST 297
           R   + HSV  +L D+ A ADN ++ ST
Sbjct: 388 RPRAKSHSVKTALKDEAAKADNEKSRST 415


>At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1072

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 460  GRVGTSTLW*RLNLPKSKA-AG*RHAGGPSGSIHDR 564
            GR+G+   + RL+  K  A AG R  GGP G+  DR
Sbjct: 1032 GRIGSCATYTRLSPGKGSARAGTRLGGGPEGTNGDR 1067


>At5g45410.1 68418.m05580 expressed protein similar to unknown
           protein (pir||T05524)
          Length = 342

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 263 GKKTFHYRALNAWKKRGNCPHAPSCREANLTRNGVSDA 376
           G  + H    + W K GNCP A S R A+     +S A
Sbjct: 133 GDSSKHEAVGDEWLKTGNCPIAKSFRAASKVMPLISKA 170


>At1g77320.1 68414.m09005 BRCT domain-containing protein contains
           Pfam profile PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 783

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 363 ASQMRSLAEEGKAGDGADEMLLDKSRVVVVPVGKSGDEHALVTAKS 500
           AS+MR LA+  + G G+  MLL++ R+  + VG   +  A   A S
Sbjct: 344 ASEMRKLAKLVRRGGGSRYMLLNE-RMTHIVVGTPSEREARSVAAS 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,159
Number of Sequences: 28952
Number of extensions: 167840
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)