Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0148
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.29 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.29 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.29 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.29 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.29 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.29 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           26   0.29 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.29 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.29 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.29 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.68 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   3.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.3  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  PQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPVSRX 195
           PQ   P   +  M +G      M    Q P  + PP  Q P Q        G   P +  
Sbjct: 176 PQHHQPHHQQQHMMYGGQQGANM--HQQGPPHQQPPIQQQPNQ--------GQQPPGNTA 225

Query: 196 GXFPLPM-PWESSE 234
              P P+ PW  S+
Sbjct: 226 AALPSPLYPWMRSQ 239


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  PQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPVSRX 195
           PQ   P   +  M +G      M    Q P  + PP  Q P Q        G   P +  
Sbjct: 178 PQHHQPHHQQQHMMYGGQQGANM--HQQGPPHQQPPIQQQPNQ--------GQQPPGNTA 227

Query: 196 GXFPLPM-PWESSE 234
              P P+ PW  S+
Sbjct: 228 AALPSPLYPWMRSQ 241


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 197 VPSRCRCHGNRLKSKREVPGDAY--PRASVIAIPASHNMPQ 313
           V S  +C+G + + ++  PG  Y  P A+    PA ++ PQ
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANSTYPPACYSPPQ 47


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/50 (26%), Positives = 15/50 (30%)
 Frame = +1

Query: 7   PLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPP 156
           PL     T   P+P +P  P P     P  Q P               PP
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPP 120


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 578 LSICCSRRDWSIAC*AERC 522
           L++C + R WS+ C    C
Sbjct: 348 LAVCVNERPWSLYCGEPPC 366


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -1

Query: 236 SSDDSHGIGSGKXPXRLTGAIGPSGAKGGILCSGAC 129
           SSDD+ G G G          GPS     +L    C
Sbjct: 518 SSDDAKGGGGGSGSGNNQPPGGPSSHVSAVLTCKVC 553


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 40  PEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAP 165
           P P +   PGP   +PP         PP  Q P   +PP  P
Sbjct: 153 PNPSI-IDPGP--ALPPTGFLCNN-YPPLPQVPPLPLPPIFP 190


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 227 RLKSKREVPGDAYPRASVIAIPA 295
           R+K KR+    A+P A+V   PA
Sbjct: 123 RMKDKRQRMAIAWPYAAVYTDPA 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.134    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,746
Number of Sequences: 336
Number of extensions: 4625
Number of successful extensions: 30
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)