Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0148
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 36 0.009
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 34 0.026
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.035
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 32 0.11
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.18
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 30 0.43
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 0.74
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.98
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 1.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.3
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 4.0
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 5.2
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 6.9
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 6.9
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 9.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.2
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 9.2
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.2
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.5 bits (78), Expect = 0.009
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Frame = +1
Query: 22 PETPSGPEPR----MPFGPGPDGR--MPPFAQAPEQRMPPFA----QAPEQRMPPFAPLG 171
PE PS P+P +P P R +P +AP PP A + P PP P+
Sbjct: 629 PEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVV 688
Query: 172 PMA-PVSRXGXFPLPMPWESSEEQTGGPRRCVSTCKRYCNPGIAQY 306
P A ++ PLP E+ E Q GG + + P I Y
Sbjct: 689 PEAGQLNEPVVPPLPPHDETQEPQVGGDVKATEHTQPTKTPAIVIY 734
Score = 33.1 bits (72), Expect = 0.046
Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Frame = +1
Query: 7 PLRP-QPETPSGPEPRM-PFGP-GPDGRMPPFAQ-APE-----QR--MPPFAQAPEQRMP 153
P+ P PE PS P+P + P P P PP A APE QR +P +AP P
Sbjct: 578 PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Query: 154 PFAPLGPMAP 183
P AP+ P P
Sbjct: 638 PAAPVVPEVP 647
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Frame = +1
Query: 22 PETPSGPE-PRMPFGPG----PDGRMPPFA-QAPEQRMPPFA----QAPEQRMPPFAPLG 171
PE PS P+ P +P P P + P A + P PP A +AP PP AP+
Sbjct: 554 PEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVA 613
Query: 172 PMAP 183
P P
Sbjct: 614 PEVP 617
Score = 31.5 bits (68), Expect = 0.14
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Frame = +1
Query: 7 PLRP-QPETPSGPE-PRMPFGP-GPDGRMPPFAQA-PE-----QR--MPPFAQAPEQRMP 153
P+ P PE PS P+ P +P P P PP A PE QR +P +AP P
Sbjct: 608 PVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667
Query: 154 PFAPLGPMAP 183
P AP+ P P
Sbjct: 668 PAAPVVPEVP 677
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Frame = +1
Query: 4 LPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFA----QAPEQRMPPFAPLG 171
L L P P P P P P PP A +AP PP AP+
Sbjct: 480 LSLNPPPAMPK-VFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVA 538
Query: 172 PMAP 183
P P
Sbjct: 539 PEVP 542
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 33.9 bits (74), Expect = 0.026
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Frame = +1
Query: 58 FGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFA----PLGPMAPVSRXGXFPLPMPWE 225
FG ++P +P + PP Q P Q +P A P PV + G PL P
Sbjct: 418 FGDVRHQKLP--TSSPPSQHPPVGQIPSQYLPYQAGLKVPGNTPIPVKQVGGMPLQSPLP 475
Query: 226 SSEEQTGGPRRCVSTCKRYCNPGIAQYAP--STRTRHGTFCASSTA--TPTRPERATNYR 393
S + + + + P + YAP T+ + ST+ TP P YR
Sbjct: 476 VSMKPSADDHSRATPTRSVEAPTLPSYAPRHPTQANGSRYMNPSTSRMTPQSPYMQNYYR 535
Query: 394 SPIRAADSS 420
+ D +
Sbjct: 536 PHAQMQDQN 544
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.035
Identities = 19/62 (30%), Positives = 24/62 (38%)
Frame = +1
Query: 7 PLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPV 186
P P P S P P P PP A + PP A + +PP P P P+
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Query: 187 SR 192
S+
Sbjct: 207 SQ 208
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +1
Query: 4 LPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAP 183
LP QP P P P P MPP P P A R FAP AP
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANT-SSRPSSFAPPAGHAP 229
Score = 26.2 bits (55), Expect = 5.2
Identities = 36/144 (25%), Positives = 48/144 (33%), Gaps = 8/144 (5%)
Frame = +1
Query: 7 PLRPQPETPSGP----EPRMPFGPGPDGRMPPF-AQAP--EQRMPPFAQ-APEQRMPPFA 162
P P P++ P PR P PP ++AP +PP AQ A + PP A
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 163 PLGPMAPVSRXGXFPLPMPWESSEEQTGGPRRCVSTCKRYCNPGIAQYAPSTRTRHGTFC 342
P P A P P P + R P + +P R G
Sbjct: 188 PSLPSAVPPMPPKVP-PPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNR-GPSI 245
Query: 343 ASSTATPTRPERATNYRSPIRAAD 414
S++ P P + P R D
Sbjct: 246 PSASVPPVPPSSYVLQQRPNRVDD 269
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Frame = +1
Query: 40 PEPRMPFGPGPDGRMPPFAQAPE-QRMPPFAQAP-----EQRMPPFAPLGPMAPVSRXGX 201
P PF PG +PP AP +PP AP PP P G P
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAP 538
Query: 202 FP 207
FP
Sbjct: 539 FP 540
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/71 (26%), Positives = 25/71 (35%)
Frame = +1
Query: 7 PLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPV 186
P+ P E P P+P + P P P P +PP P + PP AP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP-VPVPTAKAPPVPAPSSEAPS 1248
Query: 187 SRXGXFPLPMP 219
+P P
Sbjct: 1249 VSTPRSSVPSP 1259
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = +1
Query: 16 PQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPVSRX 195
P+P P P +P + P ++ P+ P + P APL + PV +
Sbjct: 961 PRPAAPPSIPPPLPVS---NILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKL 1017
Query: 196 GXFPLPMPWESSE 234
P+P S++
Sbjct: 1018 SSKAPPVPLPSAD 1030
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = +1
Query: 31 PSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPVSRXGXFPL 210
P P P +P P +PP A PP P +PP AP P P S P+
Sbjct: 388 PPAPPPAIPGRSAP--ALPPLGNASRTSTPPVPTPPS--LPPSAP--PSLPPSAPPSLPM 441
Query: 211 PMP 219
P
Sbjct: 442 GAP 444
Score = 30.7 bits (66), Expect = 0.24
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +1
Query: 4 LPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAP 183
LP P P P +P G +PP AP P +PP AP P AP
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPP--SAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 29.5 bits (63), Expect = 0.56
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 PLRPQPETPSGPEPRMP-FGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAP 183
PL T + P P P P +PP A P M A P +PP AP+ P P
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPP---LPPSAPIAPPLP 460
Query: 184 VSRXGXFPLP 213
PLP
Sbjct: 461 AGMPAAPPLP 470
Score = 29.1 bits (62), Expect = 0.74
Identities = 22/72 (30%), Positives = 26/72 (36%)
Frame = +1
Query: 4 LPLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAP 183
+PL PQ S P P P GR PP + P A P L P+
Sbjct: 351 IPLPPQGR--SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN 408
Query: 184 VSRXGXFPLPMP 219
SR P+P P
Sbjct: 409 ASRTSTPPVPTP 420
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 GLPLRPQPETPSGP-EPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAP 138
G P P P PS P P +P G +PP A AP P AP
Sbjct: 442 GAPAAP-PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 7 PLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLG 171
P+ P P+ P P P R+ A A ++ PP P +R P+G
Sbjct: 274 PIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 PETPSGPE--PRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPVS 189
P + S P P +P P+ R+P + +PP + PP +P P+APVS
Sbjct: 224 PTSTSAPPIPPSIPSSRPPE-RVPSLSAPAPPPIPPPSNGTVSS-PPNSPPRPIAPVS 279
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -3
Query: 312 WGILCDAGIAIT--LARGYASPGT--SRLLFRRFPWHR 211
WG C G+ I ++ G+ +P S +FR+FPW++
Sbjct: 351 WGFGCMLGVYIAGGISGGHVNPAVTISLAIFRKFPWYK 388
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +1
Query: 40 PEPRMPFGPGPDGRMPPFAQAPEQRM--PPFAQAPEQRMPP 156
P P M PG PP P + M PP P + MPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +1
Query: 40 PEPRMPFGPGPDGRMPPFAQAPEQRM--PPFAQAPEQRMPP 156
P P M PG PP P + M PP P + MPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +1
Query: 40 PEPRMPFGPGPDGRMPPFAQAPEQRM--PPFAQAPEQRMPP 156
P P M PG PP P + M PP P + MPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +1
Query: 40 PEPRMPFGPGPDGRMPPFAQAPEQRM--PPFAQAPEQRMPP 156
P P M PG PP P + M PP P + MPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.98
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +1
Query: 7 PLRPQPETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPV 186
P+RPQ P P+ P P P +PP A PP P PP P V
Sbjct: 1691 PVRPQSAAP--PQMSAPTPPPPPMSVPPPPSA-----PPMPAGPPSAPPPPLPASSAPSV 1743
Query: 187 SRXG 198
G
Sbjct: 1744 PNPG 1747
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 28 TPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPP-FAPLGPMAP 183
TPS P P +P PG + P +P + P Q MP F G AP
Sbjct: 430 TPSLPVPSIPAVPGMEAMAMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAP 482
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +1
Query: 85 PPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAPVSRXGXFPLPMPWESSE 234
PP A + PP A AP +PP P +S P P+P E
Sbjct: 1884 PPPPMALPKAGPPSA-APTSALPPAGPPAGATAISGNPGMPAPVPLTGKE 1932
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 22 PETPSGPEPRMPFGPGPDGRMPPFAQAPEQRMPPFAQAPEQRMPPFAPLGPMAP 183
P P+ P +P GPG +PP P M + +P P AP+ P P
Sbjct: 269 PGMPAMPMMNVPMGPGGAPLVPP----PPPGMVMASPSPAAATIPGAPVMPNIP 318
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +1
Query: 22 PETPSGPEPRMPFGPGPDGRMP-----PFAQAPEQRMPPFAQAPEQRMP 153
PE P EP +P P P+ +P P PE+ +P P + +P
Sbjct: 99 PEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 479 MSLPWGLTPATCMRY--TAPLSMQSTSHAVNNKW 574
M+L W L +TC+ Y +A L ++T + NKW
Sbjct: 203 MNLQWFLIASTCILYLISAGLMSKATFYFEMNKW 236
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 73 DGRMPPFAQAPEQRMPPF 126
+G PPFAQ P ++ PF
Sbjct: 180 EGTPPPFAQQPAEQFSPF 197
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 118 AFFVQELVRKVAFYRQDQVQKASWVQD 38
A + Q LV+K FY + V +WV+D
Sbjct: 401 ASYRQPLVQKYTFYTRTPVDLNAWVED 427
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 300 TICPKHPNPTWDLLRLLHRHPNKTRTSN 383
++ P NP +L+LL H N+ +T+N
Sbjct: 259 SLVPNEKNPKEYILKLLFDHLNRKKTNN 286
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 626 RKREVKAEAGAQXGPRRRDSXSFSGT 703
+KRE KAE AQ G R R + SG+
Sbjct: 1090 KKREEKAEWFAQHGKRLRQDGNSSGS 1115
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +1
Query: 103 PEQRMPPFAQAPEQRMPPFAPLGPMAPVSRXGXFPLPMPWESSEEQTGGPRR 258
P R P QAPE PF P P P P PW ++ Q ++
Sbjct: 281 PFMRNKPAEQAPEN---PFRD--PENPFKDPASAPAPNPWSINDVQANNDKK 327
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 226 SSEEQTGGPRRCVSTCKRYCNPGI--AQYAPSTRTRHGTFCASS-TATPTRPERATNYRS 396
S QTG P + +S+ K +PGI + + S T H + A+ P+ R + S
Sbjct: 94 SGSSQTGSPSQSLSSNKEPSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDSGS 153
Query: 397 PIRAA 411
+ A
Sbjct: 154 SLNTA 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,417
Number of Sequences: 5004
Number of extensions: 69101
Number of successful extensions: 256
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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