Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0147
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    27   3.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.9  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   3.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.9  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   9.1  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.1  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   9.1  

>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 569 QRTGSLAALVIFIIKALLMTCCQ 501
           Q TG+L  L  +I+ AL+MT CQ
Sbjct: 9   QGTGTLCTLAAWILLALVMTGCQ 31


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 556 DPVLWKYYGITVTDDNLVVIDWRKGVRRSLFPKRCYVYFMEDVD 687
           D  LW  YG  V D  L V+  +  +   L P R  VY + +VD
Sbjct: 184 DTQLWNIYGYPVVDLQLSVLS-KGHIEFYLKPTRQTVYRLSEVD 226


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 AKEYNIEKSCDKYMNVDVVKQFMEMYKMACS 262
           AK   I +SC KYMN D V   ++ +KM CS
Sbjct: 128 AKNLYICESCLKYMNSDHV---LQRHKMKCS 155


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 56   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 190
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
 Frame = -2

Query: 471 AGQVETLAVG---SVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSE------- 322
           AG V ++      +V  RG+ ++ + AS  P++ PA    +N      VED+        
Sbjct: 618 AGHVNSMLTSKAKTVTRRGNANIYKKASDRPWNDPAPRKKKNAPE---VEDTRPLLRAII 674

Query: 321 -DFDGFFHLELVGVDEGLSTREHAILY 244
            DF    H++  GV   + TR+   +Y
Sbjct: 675 LDFSAVNHIDTTGVQALVDTRKELEIY 701


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 568 WKYY-GITVTDDNLVVIDWR 624
           W Y  GI V DD + + DWR
Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 77  VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 184
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,036
Number of Sequences: 5004
Number of extensions: 54279
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)