Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0147
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.4  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        29   4.2  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   7.3  
SB_35740| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 256 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 426
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 427 A 429
           +
Sbjct: 280 S 280


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -2

Query: 357 NIEVLSVVEDSEDFDGFFHLELVGVDEGLSTREHAILYISMNCLTTSTFMYLSQ---LFS 187
           N  V +   DSE F        + V  GL T ++ +LY++++ L  +T+    Q   L +
Sbjct: 244 NWRVFATEIDSEIFKKPLETLKLAVPSGLYTIQNNLLYVALSNLDAATYQVTYQLKILTT 303

Query: 186 MLYSLAISLMSSNMVGW 136
            L+S+A+     + + W
Sbjct: 304 ALFSVAMLSKKLSSIKW 320


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 367 TACWMRERINGGMFVYAFTAACFHR 441
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_35740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 372 VLDERKDQRRHVRLRFYCRVLPQNRLQGSLPGPLLTR 482
           +L E+K +  HV +R+  R LP+   Q   PGP+  R
Sbjct: 181 ILVEKKGREYHVYVRYELRPLPE---QNGEPGPMFVR 214


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 407 SSTLLLPRASTEPTARVSTWPAP 475
           SST+  P++ST PT + ST P P
Sbjct: 517 SSTIHTPQSSTNPTPQSSTSPTP 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,948,083
Number of Sequences: 59808
Number of extensions: 451890
Number of successful extensions: 1101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)