Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0147
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL132949-27|CAB61105.1|  209|Caenorhabditis elegans Hypothetical...    29   3.7  
Z80217-2|CAB02288.1|  209|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   8.5  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    28   8.5  

>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 294 LVGVDEGLSTREHAILYISMNCLTTSTFMY 205
           L+G+D  L   EH    IS+N L T+TF Y
Sbjct: 406 LLGLDGSLIFLEHVFWVISLNTLFTATFAY 435


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 372 RSPHENIEVLSVVEDSEDFD 313
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AL132949-27|CAB61105.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.31 protein.
          Length = 209

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -2

Query: 468 GQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 289
           GQV  L V   +   S ++  + + + F +  ++P E +   ++V+  +DF G F   ++
Sbjct: 51  GQVPYLTVDGFDIPQSAAIIRYLA-NKFGYAGKTPEEQVWADAIVDQFKDFMGSFRERIM 109

Query: 288 GVDEGLSTREHA 253
               G S  E A
Sbjct: 110 AHFAGKSQEEIA 121


>Z80217-2|CAB02288.1|  209|Caenorhabditis elegans Hypothetical
           protein F37B1.2 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -2

Query: 468 GQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 289
           GQ+  L V   E   S ++  + +   F    ++P E   V +VV+  +DF G F   ++
Sbjct: 51  GQMPVLNVDGFEIPQSAAITRYLA-RKFGFAGKTPEEEAWVDAVVDQFKDFFGEFRKLII 109

Query: 288 GVDEGLSTRE 259
               G S  E
Sbjct: 110 AQRAGKSVEE 119


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 167 IAKEYNIEKSCDKYMNVDVVKQ 232
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 167 IAKEYNIEKSCDKYMNVDVVKQ 232
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -2

Query: 273 LSTREHAILYISMNCLTTSTFMYLSQLFSMLYSLAISLMSSNMV 142
           L+  E  +LY ++     +T +++ ++  +L+ L +S+M  NM+
Sbjct: 716 LTIGEFTVLYRNLALCPANTMVWIGKVVFILFELFVSIMQFNML 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,480
Number of Sequences: 27780
Number of extensions: 319834
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)