Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0144
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    27   2.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   4.0  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.0  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   4.0  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   4.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   7.0  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.0  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.2  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   9.2  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 259 IKLLGLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 143
           I   G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 381 IDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 321 PASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSY 458
           P+  ++  R+G S      R RT+R   DEA     +ES + D SY
Sbjct: 85  PSKHRKGTRNGSS----FSRHRTIRDLDDEAESVTSEESESDDSSY 126


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 240 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 109
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 378 RSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 503
           R+   +    ++HD G   S + DR     + K++   +HRE
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 390 LRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRPTKLKHTETCEKNPLPHKGR 569
           L Q   +A   GRK  +   RSY + +     P+  R+  PT L H E+  +N  P   R
Sbjct: 594 LAQGDPKAKSFGRKFRSFLRRSYDTFQRNLHEPDDERQREPT-LGHIESSIENHRPRYSR 652


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 158 EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKFYS 262
           + F +   +++DTNEK V+ SA  + ++  Q FYS
Sbjct: 67  DAFESLKRQEIDTNEKEVIVSA-PITSKPAQVFYS 100


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +3

Query: 423 GRKESTAPDRSYRSGEGKEQIPERHRELRPTKLKHTETCEKNPLPHK 563
           G ++  AP+ ++ + +  +++ E  +E RP  +KH  +  K P P++
Sbjct: 182 GVEKRIAPNENFVADK-TDELNEFEKEFRPFFIKHQMSLSKYPSPNE 227


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 107 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKFYSTVSRS 277
           P  K L K+  +L+S L+    SCL+D  T+ K ++       +EKTQ+ +  + R+
Sbjct: 14  PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQVFDDLKRT 64


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 249 WVFSVATSSADGSTIFSLVSTSRRQL 172
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 249 WVFSVATSSADGSTIFSLVSTSRRQL 172
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 249 WVFSVATSSADGSTIFSLVSTSRRQL 172
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 249 WVFSVATSSADGSTIFSLVSTSRRQL 172
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 252 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 154
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,077
Number of Sequences: 5004
Number of extensions: 59730
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)