Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0144
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22795.1 68415.m02704 expressed protein 35 0.070
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 33 0.28
At5g53800.1 68418.m06685 expressed protein 32 0.49
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 30 1.5
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 30 1.5
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 2.6
At5g16200.1 68418.m01893 50S ribosomal protein-related contains ... 29 4.6
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 29 4.6
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 29 4.6
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 28 6.0
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 28 6.0
At3g53640.1 68416.m05925 protein kinase family protein contains ... 28 8.0
At2g47980.1 68415.m06004 expressed protein 28 8.0
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 28 8.0
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 34.7 bits (76), Expect = 0.070
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +3
Query: 315 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 494
+E AS Q + E+ + S + + ++ ++ KE +AP + E ++ E
Sbjct: 549 KEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEE 608
Query: 495 HRELRPTKLKHTETCEK 545
TK K TET EK
Sbjct: 609 SASQEETKEKETETKEK 625
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +3
Query: 306 DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 485
+S ++ R R SP R + SDE+ DD +++S++ ++ GK +
Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852
Query: 486 PERHRELRPTKLKHTETCEKNPL 554
RH R KH++ KN L
Sbjct: 853 -RRHVSSRSPHSKHSQ--HKNTL 872
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 31.9 bits (69), Expect = 0.49
Identities = 23/84 (27%), Positives = 32/84 (38%)
Frame = +3
Query: 294 EAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEG 473
E+ +S +E R+ R RSR R+D + D ES + Y E
Sbjct: 67 ESGSESEKEERRRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESES---ESEYSDSEE 123
Query: 474 KEQIPERHRELRPTKLKHTETCEK 545
E ER R R K + E E+
Sbjct: 124 SESEDERRRRKRKRKEREEEEKER 147
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 244 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 125
++ GN +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +2
Query: 23 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 202
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 203 KIVLPSAEDVATEKTQKFYSTVS 271
AED A E+ + VS
Sbjct: 570 ----LDAEDRAAERKAEVEKAVS 588
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +3
Query: 288 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 467
P E R+S P +RR SPP R R S + ++G+ ES +G
Sbjct: 277 PYEKRRESRSPPPYEKRR--ESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAG 334
Query: 468 EGKEQIPERHRELRPTK 518
G + RE P++
Sbjct: 335 RGYDGADSPIRESSPSR 351
>At5g16200.1 68418.m01893 50S ribosomal protein-related contains
weak similarity to Cyanelle 50S ribosomal protein L35.
(Swiss-Prot:P14810) [Cyanophora paradoxa]
Length = 163
Score = 28.7 bits (61), Expect = 4.6
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Frame = +3
Query: 282 FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKE-----STAP 446
F+ AHR S E +G +SP L R +TLR D++ D R+ +P
Sbjct: 9 FKLFAAHR-SLEASTAGSPTMSPTKSPVFNLRRRKTLRMLFDKSSDSRRRNLRQILEESP 67
Query: 447 DRSYRSGEGKEQIPERHRELRPTKLKHTETCEKNPLPHKGR 569
+ SG K HR R KL+ +P P+KGR
Sbjct: 68 ESDGNSGNKKR---GNHRATR-RKLRELLVTSPSP-PYKGR 103
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Frame = +3
Query: 315 EEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 494
E +R +SPP PLG + L ++ DD +E +S G G +
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNGVAKGEGN 505
Query: 495 HRELRPTKLKHTETCEKNPLPH-KGRH*AREISLNH---YFITVTSQM 626
+++ + + E + + KG+H +R + + Y TV Q+
Sbjct: 506 GNKVKGEAQEEVDDDEDDDVSKGKGKH-SRHVEVRRDCPYLDTVNRQV 552
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +3
Query: 288 PAEAHRDSGEEPASGQRRCRSGE--SPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYR 461
P R P G+ R RSG+ SPP R++ +E +D R S +P
Sbjct: 140 PRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSI-SPREERYDGRRSYSRSPASDGS 198
Query: 462 SGEGKEQIPERHRELRP 512
G + + R L P
Sbjct: 199 RGRSLTPVRGKSRSLTP 215
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 92 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATE 241
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEE 130
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 283 NQTSRYRRIKLLGLLSGNVFSRRKHNLFIG--VDVTETAGVEAFELTLQVCGDLGEV 119
N + R+ LL + G V S RKH F+G D E +EA E L C D V
Sbjct: 293 NYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQKLEAVEKHLIKCVDARRV 349
>At3g53640.1 68416.m05925 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 642
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +3
Query: 303 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 467
R+S + G+ S GR + D+ D GR+E + Y+SG
Sbjct: 82 RESNRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRREDQSDQEIYKSG 136
>At2g47980.1 68415.m06004 expressed protein
Length = 1098
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 354 ESPPEPLGRSRTLRQD-SDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRPTKLKHT 530
E P+ L RSR QD D++ + G+ + + + RS + E + +E RP K K +
Sbjct: 2 EDSPQGLKRSRDPDQDQDDDSGEAGKADGSGGENQERSSDQIELDDDDFQETRP-KPKRS 60
Query: 531 ET 536
T
Sbjct: 61 RT 62
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +3
Query: 306 DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 482
+S ++ R R SP R + SDE+ DD +++S++ ++ GK +
Sbjct: 824 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR 882
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,702
Number of Sequences: 28952
Number of extensions: 329284
Number of successful extensions: 1198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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