Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0143
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.13
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 31 0.22
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 30 0.39
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.6
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 3.6
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 4.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 8.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 8.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.3
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.3
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.5 bits (68), Expect = 0.13
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +2
Query: 311 IRSEQTNNFIVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 490
+ SE+T + T E E+ RE I LRS L D + VE + E + E+
Sbjct: 974 LASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEVLKEEKESSSKEL 1033
Query: 491 YKAIEDR*PQLPTSANENLKKMIERLR 571
K +ED + ++ + KK E++R
Sbjct: 1034 AKQLEDAVREKDSAL--SFKKDYEKIR 1058
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 338 IVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*P 517
I + L++ + +E+++E I RS L + EKT+ LE Q E + I++
Sbjct: 1570 IARLRSQLESTKQYYEKEKETEILAARSEL---VAEKEKTKEELENQLNEKSQRIKELEE 1626
Query: 518 QLPTSANENLKKMIE 562
Q +++EN I+
Sbjct: 1627 QAQKNSSENTHDNID 1641
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 338 IVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEK--TRLTLEQQTAEVYKAIEDR 511
I+A + L A+ E +E+ E +NE R+K+ E +K + T + + + +E++
Sbjct: 1592 ILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEK 1651
Query: 512 *PQLPTSANENLKKMI 559
+ + + LKK++
Sbjct: 1652 LKENSANFDVKLKKVV 1667
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 30.7 bits (66), Expect = 0.22
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +2
Query: 344 ATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ--QTAEVYKAIEDR*P 517
A +E + ++E +EA +NE R L+ LEG ++ L++ Q + YK E R
Sbjct: 5 AVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESRAT 64
Query: 518 QLPTSAN--ENLKKMIERLRET*GTSSQXP 601
Q T N + ++ ER + T+S+ P
Sbjct: 65 QEETETNLDDEYHRLGEREPKVLVTTSREP 94
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/57 (21%), Positives = 31/57 (54%)
Frame = +2
Query: 326 TNNFIVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 496
T N I++ + + + HEE + ELR++++++++ E+ ++ E+Y+
Sbjct: 85 TLNNILSMRTETGSMAKAHEEVSQQINTELRNKIREYIDQTEQQKVVAANAIEELYQ 141
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 57 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQ 212
A+ ETKST ++ GG A +A P +P P +P P+ E ++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVE 915
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 6 SSDAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 128
S D L+ L R + +E E ++ +C E K L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 613 WLPARTLRTCSSCF--AQTLDHLLEVLVRACRQLWSSIFDGLVH 488
W+ R L+T S + TL+H + + + L+S++F +VH
Sbjct: 373 WIVKRQLKTRSETIITSSTLEHAISIRDSVAKYLYSALFLWIVH 416
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 317 SEQTNNFIVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 496
S++TN+F + K E+ E R + + +KD L+ + K++ LE +
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPRSSQHWKNEVAMKDLLKNLIKSK--LESSSDVNTP 312
Query: 497 AIEDR*PQLPT 529
I D P+LPT
Sbjct: 313 LIFDPWPELPT 323
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 377 THEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQLPTSANENLKKM 556
T E +RE + + + +++ E + +TR+ LE+Q V IED + S E L
Sbjct: 456 TSESERE--LEKKKEQVEKKQEELMQTRIVLEEQVFLVENMIEDAKAKRKFSEVETLLSS 513
Query: 557 IERLRE 574
+ L E
Sbjct: 514 LAPLHE 519
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 12 DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 104
DA +FRS+CRL V + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 568 QTLDHLLEVLV-RACRQLWSSIFDGLVHFRGLLFQGQP 458
+TL+++++ L R Q W+ +F L+ F +L +G P
Sbjct: 42 ETLENVIQALCERLKEQSWTIVFKTLIVFHVMLKEGAP 79
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 320 EQTNNFIVATKEA-LDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 496
+Q VA ++A E K E + + + SR+K + +E TR L +Q ++ +
Sbjct: 460 KQVEELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTR--LYKQLQDIEE 517
Query: 497 AIEDR*PQLPTSANENLKKMIERLRE 574
E++ ++ E++ ++ E + E
Sbjct: 518 DYENKLMRMEQQWREDVDQLQEYVEE 543
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +2
Query: 374 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQLPTSANENLKK 553
E +EE + + E +++K+ +KTR + EQQT ++ + + + + + LKK
Sbjct: 402 EKNEEVKS--LREKAAKVKNDCTSEKKTRQSYEQQTVKIEEQL-----KFLLNKEKKLKK 454
Query: 554 MIERL 568
IE L
Sbjct: 455 SIEAL 459
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 475 ADRGSVQGHRR*MTTAADKREREPQEDDRASARNMRN 585
+DR S+ R + + D R R P D R+ RN R+
Sbjct: 134 SDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKRNHRS 170
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 353 EALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQ 475
E L K ++ ++++ INEL R+K + V + T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 317 SEQTNNFIVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYK 496
SEQT A + + K E E L++ KD+ ++K LE++ + K
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRLIK 450
Query: 497 AI 502
I
Sbjct: 451 EI 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,620
Number of Sequences: 5004
Number of extensions: 36332
Number of successful extensions: 155
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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