Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0143
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0463 + 3502708-3503535                                           34   0.100
11_06_0289 - 21969248-21973516                                         32   0.40 
11_06_0185 + 21018045-21022307                                         32   0.40 
08_02_0921 - 22640125-22640268,22640349-22640423,22640496-226407...    31   0.93 
06_03_0047 - 15872817-15872911,15873648-15873897                       29   2.8  
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521...    28   6.6  
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172...    28   6.6  
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104...    28   8.7  

>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +2

Query: 320 EQTNN--FIVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 490
           E+TN+   + A  E +D K +  + K+E  + +L+ +LK+ LEG  K++  +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238

Query: 491 YKAIEDR*P 517
            K IE   P
Sbjct: 239 EKGIEHNKP 247


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 353 EALDAKXETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 502
           +A +   +TH+  E  +  I +L  RLKDH+E  EKT+   EQ   E   A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 353 EALDAKXETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 502
           +A +   +TH+  E  +  I +L  RLKDH+E  EKT+   EQ   E   A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436


>08_02_0921 -
           22640125-22640268,22640349-22640423,22640496-22640757,
           22642286-22642578,22642609-22642812,22643216-22643901,
           22643958-22644033
          Length = 579

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 278 EQWRPSY*FQATSPLFSCLQL-XLDLFDGRSLFG*VGATGNRYAHRLREYHLVRQTALRH 102
           E W P+Y FQ  S LFSC +L  LDL   R     +G  G     +LR + +     + +
Sbjct: 105 ELWFPTYNFQLHSCLFSCRELACLDLDSCRLPPARMGFEGFPNLKKLRLHEVTLPEHMGN 164

Query: 101 LLAA 90
           +LAA
Sbjct: 165 MLAA 168


>06_03_0047 - 15872817-15872911,15873648-15873897
          Length = 114

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 640 RSRSCWNFSWLPARTLRTCSSC 575
           +S  CWN  W PA TLRT + C
Sbjct: 21  KSSKCWNQIWQPA-TLRTSNGC 41


>05_01_0580 +
           5210002-5210170,5210466-5210524,5210883-5211668,
           5211898-5212737
          Length = 617

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 PVPRRADSPE-KTPSVEEIQXXLKAAEERRRSLEL 257
           P PR ++    KTP + E++  +++ +ER ++LEL
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLEL 177


>03_01_0218 -
           1717246-1717892,1717995-1718163,1718262-1720022,
           1720531-1720610,1720854-1720981,1721004-1721012,
           1723701-1723742,1725891-1726002,1726358-1726514,
           1726678-1726762,1727628-1727713,1727998-1728042
          Length = 1106

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +2

Query: 383 EEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQLPTSANENLKKMIE 562
           E   EA++ E++ RLK  LEG    R+  + + A+ + A  D    +P    +  + +  
Sbjct: 538 ENNMEAFLEEVKKRLKVELEG----RMASDDRAADRWAAGGD----IPADPKQIARSIAN 589

Query: 563 RLRET 577
           ++RET
Sbjct: 590 QIRET 594


>05_01_0155 +
           1043045-1043240,1043325-1043401,1043963-1044092,
           1044376-1044473,1045622-1045729,1045748-1045800,
           1046876-1047080
          Length = 288

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 365 AKXETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 487
           A+ E++  K +   N   S   L++H++ +EKT +T  Q++ E
Sbjct: 83  AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,103
Number of Sequences: 37544
Number of extensions: 295062
Number of successful extensions: 993
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)