Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0143
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) 35 0.058
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 29 3.8
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17) 28 6.7
SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042) 28 8.9
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 28 8.9
SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 28 8.9
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 28 8.9
>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
Length = 299
Score = 35.1 bits (77), Expect = 0.058
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +2
Query: 311 IRSEQTNNFIVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 490
I EQ +E + K E +EKR++Y+ L++RL + VE+ R T+E+
Sbjct: 189 IAQEQIEQQSKLIEEKIMQKMEMTKEKRDSYMEALKTRLHEKSLDVEQKRQTMEEIQMFQ 248
Query: 491 YKAIEDR 511
K +E++
Sbjct: 249 RKILEEK 255
>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 344 ATKEALDAKXETHEEKREAYINELRSRLKDHLEG-VEKTRLTLEQQTAEV 490
A ++AL+A +E R+ + ELR ++ + E +E+ R+ E+Q AE+
Sbjct: 52 AIRDALNAAEAKAQEDRKQALEELRKKMNEEREQCLEQARIRAEEQMAEI 101
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 350 KEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 484
K+ D+ E H+E ++ + E K H+E ++ T + +EQQ A
Sbjct: 1422 KKVQDSSNEIHKENQD--LREELKMAKRHIESLKSTLIQVEQQAA 1464
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 302 PPRSWPSSEQWRPSY 258
PP ++PSS+QW P+Y
Sbjct: 508 PPGAYPSSDQWIPAY 522
>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 1693
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 667 AACCTSPXWRSRSCWNFSWLPARTLRTCSSCF 572
A C +P + SC + LP LR+C S F
Sbjct: 425 ATSCRTPPFSLNSCLGLAQLPLTRLRSCISVF 456
>SB_56390| Best HMM Match : CHASE3 (HMM E-Value=0.042)
Length = 440
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 356 ALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 490
AL K + + +N+ +L + +EG++ T +TL+QQ ++
Sbjct: 235 ALQKKYSDELKSSQDELNDFVIQLDEEVEGMQSTIMTLQQQIKDI 279
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/58 (22%), Positives = 34/58 (58%)
Frame = +2
Query: 350 KEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQL 523
+E ++ T E EA +++L + EG+ +++++L++ +E++ +ED+ +L
Sbjct: 447 QEDIERHQLTKERLHEA-VSDLLELTRGETEGLRESQISLDENWSELWALLEDKEEEL 503
>SB_11636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 138 AEPVGVPVPRRADSPEKTPSVEEIQXXLKAAEERRRS 248
++P G P P++ SP+K + + L+AA+ R S
Sbjct: 23 SKPTGKPTPQQFRSPQKVVQISVPRAGLQAAQNARYS 59
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 374 ETHEEKREA-----YINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQLPTSAN 538
E E++RE ++N+LR L +L G++ L +TAE AI+D +L S
Sbjct: 443 EAEEQQREITELQKHLNKLRRILSKNLTGIQ---LPNGGETAESEAAIDDFIVKLHQSIG 499
Query: 539 ENLKKMIE 562
EN K+ +E
Sbjct: 500 ENPKENME 507
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 305 SRIRSEQTNNFIVATK-EALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 481
SR+ SE + I K + +A E ++K + INE R +L++ ++ ++ +
Sbjct: 1455 SRLNSELEDALIDLEKAQTNNANLEKKQKKIDIQINEWRVKLEEVQADLDNSQKEARNYS 1514
Query: 482 AEVYK---AIEDR*PQLPTSANEN 544
E+YK A +++ Q+ EN
Sbjct: 1515 TEMYKIKAAFDEQSEQVEALKREN 1538
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,449
Number of Sequences: 59808
Number of extensions: 327947
Number of successful extensions: 1069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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