Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0143
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At1g69670.1 68414.m08018 cullin, putative contains similarity to...    29   3.1  
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ...    29   4.1  
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo...    29   4.1  
At5g22040.1 68418.m02566 expressed protein                             28   7.2  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   9.6  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    27   9.6  
At1g12080.2 68414.m01397 expressed protein                             27   9.6  

>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 491

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -2

Query: 613 WLPA-RTLRTCSSCFAQTLD-----HLLEVLVRACRQLWSSIFDGLVHFRGLLFQGQPGL 452
           WLP+  T+R   S F Q  D     +LLE+L      + + IF+ L+       +  P +
Sbjct: 406 WLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPAM 465

Query: 451 LNALKM 434
              LKM
Sbjct: 466 RRRLKM 471


>At1g69670.1 68414.m08018 cullin, putative contains similarity to
           Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
           [Homo sapiens]; contains Pfam profile PF00888: Cullin
           family
          Length = 732

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +2

Query: 338 IVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT--AEVYKAIEDR 511
           +VA KE    K ET +   E    + + +++  +  + K+R  L+     AEV K ++ R
Sbjct: 642 VVAQKETEPEKQETRQRVEE----DRKPQIEAAIVRIMKSRRVLDHNNIIAEVTKQLQTR 697

Query: 512 *PQLPTSANENLKKMIER 565
               PT   + ++ +IER
Sbjct: 698 FLANPTEIKKRIESLIER 715


>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 607

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +2

Query: 383 EEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQLPTSAN-----ENL 547
           E+KR +  NE+   LK+ LE V+K    L+    E+ +  E    +  +S N     + +
Sbjct: 512 EDKRMSRDNEIIKTLKEELENVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQKV 571

Query: 548 KKMIERLRET*GTSSQXPRR 607
           KK  +  RE   T  +  RR
Sbjct: 572 KKSFQTKREDEETRERTRRR 591


>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
           3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
           contains Pfam profile PF00888: Cullin family
          Length = 732

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +2

Query: 338 IVATKEALDAKXETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT--AEVYKAIEDR 511
           +VA KE    K ET +   E    + + +++  +  + K+R  L+     AEV K ++ R
Sbjct: 642 VVAQKETEPEKQETRQRVEE----DRKPQIEAAIVRIMKSRKILDHNNIIAEVTKQLQPR 697

Query: 512 *PQLPTSANENLKKMIER 565
               PT   + ++ +IER
Sbjct: 698 FLANPTEIKKRIESLIER 715


>At5g22040.1 68418.m02566 expressed protein
          Length = 284

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 570 AKHEEQVRXVRAGNQEKFQQLRERHXGEVQQ 662
           A+H E++  + A  +E+   LR RH G+ ++
Sbjct: 151 ARHREKINTINARYEEQLATLRARHTGKREE 181


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 51  VEAMEVETKSTEIRCQEMSKGGLAYEV 131
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = +2

Query: 359 LDAKXETHEEKRE--AYINELRSRLKDHLEGV-------EKTRLTLEQQTAEVYKAIE 505
           LDA+ + +E      A   +LR R+KD LEGV            +L+++  E+YK +E
Sbjct: 496 LDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEIYKKVE 553


>At1g12080.2 68414.m01397 expressed protein
          Length = 138

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 51  VEAMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQXXLKAA 230
           VE  E + + TE + +E  +     EVI   PV     ++A+   +TP+V E +   +  
Sbjct: 62  VEEAEKKDEETEKKTEEKDE---KTEVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVV 118

Query: 231 EERR 242
           EE++
Sbjct: 119 EEKQ 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,856
Number of Sequences: 28952
Number of extensions: 214243
Number of successful extensions: 775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)