Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0142
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   0.88 
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   4.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.2  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 357 RTILNHLIHQAVQQTLSGTRVGVCTRPILVAHIQVWSVRFRQAPSGNI 214
           R + NH+  + V+   +G R  V +R + V+H  V  +  R   +G+I
Sbjct: 53  RPLPNHIRLKIVEMAANGIRPCVISRQLRVSHGCVSKILNRYQETGSI 100


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 195 DCSLGGRDSGKPNFVLMQLHW*HN 124
           DC++GG D  K  F+ + ++  H+
Sbjct: 71  DCNIGGYDFPKDTFLSLFIYGMHH 94


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 310 VRDTCWCMYEAYSRSTHP 257
           +R+  + + E Y+R+THP
Sbjct: 338 LREKIYGVLEEYTRTTHP 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,052
Number of Sequences: 336
Number of extensions: 4706
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)