Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0142
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    27   3.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.2  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    26   6.9  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   9.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   9.1  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   9.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.1  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 566 KPTF*QRAHVD*RWHLTALHLK*FLKNHSGRIS 468
           KP   Q  HVD    +TA HL   ++ H+G+I+
Sbjct: 121 KPKSIQAIHVDLSHGVTASHLAAIVEKHTGKIA 153


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +1

Query: 331  MYQMIENCPEESLRKDDVCSPVSSLSGFNYMFSQSMYEDLEEHLPVEIRPEWFLRN 498
            +++++ N P +S    ++C  +S L   N+    S+   L   +  E   +  +RN
Sbjct: 1164 LFELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRN 1219


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 GLLHCLMYQMIENCPEESLRKDDVCSPV--SSLSGFNYMFSQSMYEDLEEH 459
           G+ HC M    E     S+ K +V + V  SSL  F+     S+Y D+++H
Sbjct: 785 GITHCSMND--EGYTTISIPKANVLNSVYNSSLKNFSSSNDTSVYHDVQDH 833


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 84  TNAKLNMKNNQSRPMFY*RTFENLVPNS 1
           T A LN   ++ + ++Y   F+N VPN+
Sbjct: 91  TGAHLNAYTSREQTVYYAHAFKNAVPNA 118


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 68  FNLALVQAEFGTPYLRKSRLCHQWSCINTKLGFP-----ESLPPREQSAVVLSRILPDGA 232
           +NLA++   FG P++    +   +S I+T L        E  PP E + +    I+ D  
Sbjct: 250 YNLAILAKHFGKPFI----VAAPFSSIDTSLASGSQITIEQRPPIEMTTIT-GPIITDSN 304

Query: 233 WRNLTD 250
            RNL D
Sbjct: 305 SRNLED 310


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 355 DNSQSSDTSGSAADPVRDTCWCMYEAYSRST 263
           D SQ+    GS  DPV+     +  AY++ T
Sbjct: 91  DKSQNQSKDGSITDPVQAAVLALSVAYAKPT 121


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 286 TYTNTCPGQGLLHCLMYQMIEN 351
           TYT   PGQ  L  ++YQ I +
Sbjct: 206 TYTRRGPGQAYLRSILYQCIND 227


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 104 PYLRKSRLCHQWSCINTKLGFPESLPPR 187
           P  R S +C     +NTK  F E LPPR
Sbjct: 2   PLGRSSWICCAKYFVNTKSRFNEILPPR 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,437
Number of Sequences: 5004
Number of extensions: 78326
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)